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Series GSE122482 Query DataSets for GSE122482
Status Public on Nov 13, 2021
Title The circular RNA profiling of 10 paired HCC and matched peritumor tissues
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary We collected primary HCC tumor and matched peritumor tissues from 10 HBV-related HCC patients to analyze the circRNA profile and its alteration in HCC through RNA-seq. A total of 92,204 circRNAs were identified in these 20 tissue samples with more than two unique back-spliced reads, of which 42 circRNAs were dysregulated in all HCC tumor tissue samples when compared with matched peritumor tissues (fold changeā‰„2 and p<0.05). As the detailed analysis of circRNA profiles in HCC, our study undoubtedly improved the comprehensiveness of HCC associated circRNA profiles.
Overall design Examination of 10 paired HCC and matched peritumor tissues
Contributor(s) Qiu L, Li Z, Cai Z, Liu X
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Submission date Nov 13, 2018
Last update date Nov 14, 2021
Contact name Liman Qiu
Organization name Mengchao Hepatobiliary Hospital of Fujian Medical University
Street address Xihong Road 312, Fuzhou 350025, Fujian, P. R. China.
City Fuzhou
ZIP/Postal code 350025
Country China
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (20)
GSM3467136 1232-1
GSM3467137 1263-1
GSM3467138 1302-1
BioProject PRJNA505335
SRA SRP168496

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE122482_RAW.tar 15.4 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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