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| Status |
Public on Nov 13, 2021 |
| Title |
The circular RNA profiling of 10 paired HCC and matched peritumor tissues |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We collected primary HCC tumor and matched peritumor tissues from 10 HBV-related HCC patients to analyze the circRNA profile and its alteration in HCC through RNA-seq. A total of 92,204 circRNAs were identified in these 20 tissue samples with more than two unique back-spliced reads, of which 42 circRNAs were dysregulated in all HCC tumor tissue samples when compared with matched peritumor tissues (fold changeā„2 and p<0.05). As the detailed analysis of circRNA profiles in HCC, our study undoubtedly improved the comprehensiveness of HCC associated circRNA profiles.
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| |
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| Overall design |
Examination of 10 paired HCC and matched peritumor tissues
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| |
|
| Contributor(s) |
Qiu L, Li Z, Cai Z, Liu X |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Nov 13, 2018 |
| Last update date |
Nov 14, 2021 |
| Contact name |
Liman Qiu |
| E-mail(s) |
liman0280@163.com
|
| Organization name |
Mengchao Hepatobiliary Hospital of Fujian Medical University
|
| Street address |
Xihong Road 312, Fuzhou 350025, Fujian, P. R. China.
|
| City |
Fuzhou |
| ZIP/Postal code |
350025 |
| Country |
China |
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| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
|
| Samples (20)
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| Relations |
| BioProject |
PRJNA505335 |
| SRA |
SRP168496 |
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