|
| Status |
Public on Aug 08, 2019 |
| Title |
Single-cell RNA-seq of frequent and rare populations in mouse bone marrow |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
This data set contains single-cell RNA sequencing data of mature immune cells, hematopoietic and immune progenitors, mesenchymal cells (CAR cells, fibroblasts, osteoblasts, chondrocytes, putative mesenchymal stem cells), endothelia, smooth muscle, and Schwann cells.
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| |
|
| Overall design |
The following fractions were subjected to single-cell RNA-sequencing using 10x genomics: Total live bone marrow; Lineage-negative CD45-negative bone marrow; Lineage-CD45-CD71- bone marrow (obtained by crushing or flushing of bones); Lineage-CD45-CD71- bone-associated fraction (obtained by digesting bone chips); Lineage-Kit+ bone marrow.
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| |
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| Contributor(s) |
Baccin C, Al-Sabah J, Velten L, Trumpp A, Steinmetz LM, Haas SF |
| Citation(s) |
35914228 |
|
https://www.biorxiv.org/content/10.1101/718395v1
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| |
| Submission date |
Nov 13, 2018 |
| Last update date |
Jun 14, 2023 |
| Contact name |
Lars Velten |
| E-mail(s) |
lars.velten@crg.eu
|
| Organization name |
CRG
|
| Department |
Bioinformatics and Genomics
|
| Lab |
Velten lab
|
| Street address |
C. Dr. Aiguader 88, P05
|
| City |
Barcelona |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (7)
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| This SubSeries is part of SuperSeries: |
| GSE122467 |
LCM-Seq of niches and single-cell RNA-seq of mouse bone marrow |
|
| Relations |
| BioProject |
PRJNA505312 |
| SRA |
SRP168425 |
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