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| Status |
Public on Apr 26, 2019 |
| Title |
BCL6 corepressor contributes to Th17 cell formation by inhibiting Th17 fate suppressors |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
CD4+ T helper 17 (Th17) cells protect vertebrate hosts from extracellular pathogens at mucosal surfaces. Th17 cells form from naïve precursors when signals from the T cell antigen receptor (TCR) and certain cytokine receptors induce the expression of the RORγt transcription factor, which activates a set of Th17-specific genes. Using T cell-specific loss-of-function experiments we find that two components of the Polycomb Repressive Complex 1.1 (PRC1.1), BCL6 corepressor (BCOR) and KDM2B, which helps target the complex to unmethylated CpG DNA islands, are required for optimal Th17 cell formation in mice after Streptococcus pyogenes infection. Genome-wide expression and BCOR chromatin immunoprecipitation studies revealed that BCOR directly represses Lef1, Runx2, and Dusp4, whose products inhibit Th17 differentiation. Together, the results suggest that PRC1.1 components, BCOR and KDM2B, work together to enhance Th17 cell formation by repressing Th17 fate suppressors.
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| |
|
| Overall design |
ChIP-Seq (Input and BCOR-Specific ChIP) and RNA-Seq (WT vs BCOR-deficient cells for each of the 4 CD4+ T cell subsets)
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| |
|
| Contributor(s) |
Kotov JA, Gearhart MD, Jenkins MK |
| Citation(s) |
31053612 |
| |
| Submission date |
Oct 25, 2018 |
| Last update date |
Jul 26, 2019 |
| Contact name |
Micah Gearhart |
| E-mail(s) |
gearh006@umn.edu
|
| Organization name |
University of Minnesota
|
| Department |
Genetics, Cell Biology and Development
|
| Street address |
6-160 Jackson Hall, 321 Church St.
|
| City |
Minneapolis |
| State/province |
MN |
| ZIP/Postal code |
55455 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (38)
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|
| Relations |
| BioProject |
PRJNA498403 |
| SRA |
SRP166846 |
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