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| Status |
Public on Jun 06, 2019 |
| Title |
ChIP-seq of H3K27ac and CTCF in primary glioblastoma cultures |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We characterize H3K27ac and CTCF profiles of three primary glioblastoma cultures, and use them to bolster Hi-C datasets.
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| Overall design |
Paired inputs and ChIP experiments in duplicate for CTCF and H3K27ac for three independent cultures.
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| Contributor(s) |
Johnston MJ, Nikolic A, Gallo M |
| Citation(s) |
31249064 |
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| Submission date |
Oct 22, 2018 |
| Last update date |
Sep 30, 2024 |
| Contact name |
Marco Gallo |
| E-mail(s) |
marco.gallo@bcm.edu
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| Organization name |
Baylor College of Medicine
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| Department |
Pediatrics
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| Street address |
1102 Bates Avenue
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| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (18)
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| GSM3439932 |
G567 CTCF input |
| GSM3439933 |
G567 CTCF IP, replicate 1 |
| GSM3439934 |
G567 CTCF IP, replicate 2 |
| GSM3439935 |
G583 CTCF input |
| GSM3439936 |
G583 CTCF IP, replicate 1 |
| GSM3439937 |
G583 CTCF IP, replicate 2 |
| GSM3439938 |
G523 H3K27ac input |
| GSM3439939 |
G523 H3K27ac IP, replicate 1 |
| GSM3439940 |
G523 H3K27ac IP, replicate 2 |
| GSM3439941 |
G567 H3K27ac input |
| GSM3439942 |
G567 H3K27ac IP, replicate 1 |
| GSM3439943 |
G567 H3K27ac IP, replicate 2 |
| GSM3439944 |
G583 H3K27ac input |
| GSM3439945 |
G583 H3K27ac IP, replicate 1 |
| GSM3439946 |
G583 H3K27ac IP, replicate 2 |
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| Relations |
| BioProject |
PRJNA497855 |
| SRA |
SRP166319 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE121601_RAW.tar |
3.8 Gb |
(http)(custom) |
TAR (of BROADPEAK, NARROWPEAK, TDF) |
| GSE121601_union_G523_ctcf.bed.gz |
497.1 Kb |
(ftp)(http) |
BED |
| GSE121601_union_G523_h3k27.bed.gz |
514.3 Kb |
(ftp)(http) |
BED |
| GSE121601_union_G523_superEnhancers.bed.gz |
4.8 Kb |
(ftp)(http) |
BED |
| GSE121601_union_G567_ctcf.bed.gz |
491.5 Kb |
(ftp)(http) |
BED |
| GSE121601_union_G567_h3k27.bed.gz |
1.0 Mb |
(ftp)(http) |
BED |
| GSE121601_union_G567_superEnhancers.bed.gz |
24.8 Kb |
(ftp)(http) |
BED |
| GSE121601_union_G583_ctcf.bed.gz |
557.4 Kb |
(ftp)(http) |
BED |
| GSE121601_union_G583_h3k27.bed.gz |
494.5 Kb |
(ftp)(http) |
BED |
| GSE121601_union_G583_superEnhancers.bed.gz |
12.9 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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