|
| Status |
Public on Oct 23, 2018 |
| Title |
Next Generation Sequencing Facilitates Putative Target Identification for the Small RNA RydC |
| Organism |
Escherichia coli str. K-12 substr. MG1655 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We report the transcriptomic profile of Escherichia coli when the small RNA RydC is overexpressedand how this can be used to identify putative mRNA targets. This technique allowed us to identify potential mRNA targets to further validate in vivo.
|
| |
|
| Overall design |
We had two conditions: 1) No expression of the small RNA RydC and 2) Overexpression of the small RNA RydC
|
| |
|
| Contributor(s) |
King AM, Vanderpool CK |
| Citation(s) |
30700509 |
| |
| Submission date |
Oct 22, 2018 |
| Last update date |
Mar 20, 2019 |
| Contact name |
Alisa Margaret King |
| E-mail(s) |
amking4@illinois.edu
|
| Organization name |
University of Illinois at Urbana-Champaign
|
| Department |
Microbiology
|
| Lab |
Dr. Carin K. Vanderpool
|
| Street address |
601 S Goodwin Ave Room C211
|
| City |
Urbana |
| State/province |
IL |
| ZIP/Postal code |
61801 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL15010 |
Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA497857 |
| SRA |
SRP166315 |
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