GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE121515 Query DataSets for GSE121515
Status Public on Jan 17, 2019
Title RNA sequencing to determine gene expression changes in HMCES knockout cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary The purpose of this study was to deteremine gene expression changes in when HMCES is inactivated. We found very few changes.
Overall design Compare wild type and HMCES knockout U2OS cancer cells using RNA-seq.
Contributor(s) Mohni KN, Cortez D
Citation(s) 30554877
Submission date Oct 19, 2018
Last update date Jan 17, 2019
Contact name David Cortez
Phone 6153228547
Organization name Vanderbilt University School of Medicine
Department Biochemistry
Street address 2215 Garland Avenue
City Nashville
State/province TN
ZIP/Postal code 37232
Country USA
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (4)
GSM3438615 3525-DC-1: Wild type 1
GSM3438616 3525-DC-2: HMCES knockout clone 1
GSM3438617 3525-DC-3: HMCES knockout clone 2
BioProject PRJNA497524
SRA SRP166160

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121515_HMCES_EDGER.txt.gz 533.4 Kb (ftp)(http) TXT
GSE121515_gene_counts.txt.gz 2.4 Mb (ftp)(http) TXT
GSE121515_tpm_table-gene_symbol.txt.gz 657.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap