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GEO accession:
Series GSE121405
Query DataSets for GSE121405
Status
Public on Apr 18, 2019
Title
Dynamic enhancer partitioning instructs Zdbf2 activation during epigenetic reprogramming
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30990414
Submission date
Oct 17, 2018
Last update date
Apr 20, 2019
Contact name
teissandier aurelie
E-mail(s)
aurelie.teissandier@curie.fr
Organization name
institut curie
Department
u934
Lab
Epigenetic decisions and reproduction in mammals
Street address
26 rue d'Ulm
City
paris
ZIP/Postal code
75248
Country
France
Platforms (1)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
Samples (49)
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GSM3434572
WT (E14) ESC Rep 1_pLiz VP
GSM3434573
WT (E14) ESC Rep 1_CTCF_PS VP
GSM3434574
WT (E14) ESC Rep 1_pZdbf2 VP
GSM3434575
WT (E14) ESC Rep 2_pLiz VP
GSM3434576
WT (E14) ESC Rep 2_CTCF_PS VP
GSM3434577
WT (E14) ESC Rep 2_pZdbf2 VP
GSM3434578
WT (E14) ESC Rep 2_Adam23 VP
GSM3434579
WT (E14) ESC Rep 2_Nrp2 VP
GSM3434580
WT (E14) ESC Rep 3_pLiz VP
GSM3434581
WT (E14) ESC Rep 3_pZdbf2 VP
GSM3434582
WT (E14) ESC Rep 3_Adam23 VP
GSM3434583
WT (E14) ESC Rep 3_Nrp2 VP
GSM3434584
WT (E14) EpiLC Rep 1_pLiz VP
GSM3434585
WT (E14) EpiLC Rep 1_CTCF_PS VP
GSM3434586
WT (E14) EpiLC Rep 1_pZdbf2 VP
GSM3434587
WT (E14) EpiLC Rep 2_pLiz VP
GSM3434588
WT (E14) EpiLC Rep 2_CTCF_PS VP
GSM3434589
WT (E14) EpiLC Rep 2_pZdbf2 VP
GSM3434590
WT (E14) EpiLC Rep 2_Adam23 VP
GSM3434591
WT (E14) EpiLC Rep 2_Nrp2 VP
GSM3434592
∆Liz (E14) ESC_CTCF_PS VP
GSM3434593
∆Liz (E14) ESC_pZdbf2 VP
GSM3434594
∆Liz (E14) ESC_Adam23 VP
GSM3434595
∆Liz (E14) ESC_Nrp2 VP
GSM3434596
∆Liz (E14) EpiLC_CTCF_PS VP
GSM3434597
∆Liz (E14) EpiLC_pZdbf2 VP
GSM3434598
∆Liz (E14) EpiLC_Adam23 VP
GSM3434599
∆Liz (E14) EpiLC_Nrp2 VP
GSM3434600
∆CTCF_PS (E14) ESC_pLiz VP
GSM3434601
∆CTCF_PS (E14) ESC_pZdbf2 VP
GSM3434602
∆CTCF_PS (E14) ESC_Adam23 VP
GSM3434603
∆CTCF_PS (E14) ESC_Nrp2 VP
GSM3434604
WT (J1) ESC_pLiz VP
GSM3434605
WT (J1) ESC_CTCF_PS VP
GSM3434606
WT (J1) ESC_pZdbf2 VP
GSM3434607
WT (J1) ESC_Adam23 VP
GSM3434608
WT (J1) ESC_Nrp2 VP
GSM3434609
Eed-/- (J1) ESC_pLiz VP
GSM3434610
Eed-/- (J1) ESC_CTCF_PS VP
GSM3434611
Eed-/- (J1) ESC_pZdbf2 VP
GSM3434612
Eed-/- (J1) ESC_Adam23 VP
GSM3434613
Eed-/- (J1) ESC_Nrp2 VP
GSM3434614
WT ESC
GSM3434615
WT EpiLC
GSM3434616
WT EpiLC bisulfite-seq
GSM3434617
WT ESC_Rep 1
GSM3434618
WT ESC_Rep 2
GSM3434619
WT EpiLC_D7_Rep 1
GSM3434620
WT EpiLC_D7_Rep 2
This SuperSeries is composed of the following SubSeries:
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GSE121399
Dynamic enhancer partitioning instructs Zdbf2 activation during epigenetic reprogramming [4C-Seq]
GSE121400
Dynamic enhancer partitioning instructs Zdbf2 activation during epigenetic reprogramming [ATAC-Seq]
GSE121402
Dynamic enhancer partitioning instructs Zdbf2 activation during epigenetic reprogramming [bisulfite-seq]
GSE121403
Dynamic enhancer partitioning instructs Zdbf2 activation during epigenetic reprogramming [RNA-Seq]
Relations
BioProject
PRJNA497263
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Format
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE121405_RAW.tar
2.6 Gb
(http)
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TAR (of BIGWIG)
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