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Series GSE121226 Query DataSets for GSE121226
Status Public on Dec 17, 2018
Title Calibrated CAR activation potential directs alternative T cell fates and therapeutic potency
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary CD19-specific CARs that comprise CD28 and CD3z signaling domains program highly performing effector functions that mediate potent tumor elimination, but they impart a relatively limited T cell lifespan. Increasing functional T cell persistence without reducing effector potency is therefore likely to further enhance the therapeutic success of 1928z CAR T cells. We demonstrate that the number and position of ITAMs in 1928z CAR T cells influence functional, phenotypic and transcriptional programs, resulting in profound effects on antitumor efficacy. Improved therapeutic potency of CAR T cells can thus be achieved by calibrating activation strength, thereby retaining memory functions and preventing exhaustion, without compromising effector functions. Our transcriptional analysis underscores the potential of ITAM dosage and position to direct different T cell fates. We were able to identify a novel CAR design, termed 1XX, which programs a favorable balance of effector and memory signatures, inducing increased persistence of highly functional CARs with the replicative capacity of long-lived memory cells and potent effector functions.
 
Overall design In order to assess the different phenotypic and functional patterns of CARs encoding a single immunoreceptor tyrosine-based activation motif (ITAM), we compared the genome-wide transcriptional profiles of 1928z, 1XX and XX3 after CD19 antigen stimulation of TRAC-edited naïve T cells. Sorted naïve (TN), stem cell memory (TSCM) and effector (TEFF) CD8+ T cells served as controls.
 
Contributor(s) Feucht J, Sun J, Eyquem J, Ho Y, Sadelain M
Citation(s) 30559421
Submission date Oct 15, 2018
Last update date Mar 21, 2019
Contact name Yu-Jui Ho
E-mail(s) hoy@mskcc.org
Organization name Memorial Sloan Kettering Cancer Center
Department Cancer Biology & Genetics Program
Street address 417 E 68th St
City New York
State/province New York
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (27)
GSM3428129 TRAC-1928z-I
GSM3428130 TRAC-1928z-II
GSM3428131 TRAC-1928z-III
Relations
BioProject PRJNA496405
SRA SRP165725

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Supplementary file Size Download File type/resource
GSE121226_Feucht_DESeq2_normalized.txt.gz 3.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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