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Series GSE121137 Query DataSets for GSE121137
Status Public on Oct 12, 2018
Title Ascorbate Suppresses VEGF Expression in Retinal Pigment Epithelial Cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary In this study we show that ascorbate (vitamin C) shifts the hydroxymethylome and transcriptome in RPE cells, and downregulates expression of VEGF.
 
Overall design Examination of transcriptome and hydroxymethylome in vitamin C treated or control ARPE-19 cells
 
Contributor(s) Wang G, Sant DW, Camarena V
Citation(s) 30025088
Submission date Oct 11, 2018
Last update date Mar 21, 2019
Contact name David Wayne Sant
E-mail(s) dwsant@noordacom.org
Phone 3853758672
Organization name Noorda College of Osteopathic Medic
Department Biomedical Informatics
Lab Kyle Bills
Street address 1712 South East Bay Blvd, Building 5 Suite 300
City Provo
State/province UT
ZIP/Postal code 84606
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (14)
GSM3426716 ARPE19_Control_1_RNA
GSM3426717 ARPE19_Control_2_RNA
GSM3426718 ARPE19_Control_3_RNA
Relations
BioProject PRJNA495826
SRA SRP165215

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121137_ARPE19.All.Samples.Genomic.Input.Counts.csv.gz 2.6 Mb (ftp)(http) CSV
GSE121137_ARPE19.All.Samples.RNA.Counts.csv.gz 484.1 Kb (ftp)(http) CSV
GSE121137_ARPE19.All.Samples.hMeDIP.Counts.csv.gz 2.9 Mb (ftp)(http) CSV
GSE121137_RAW.tar 19.2 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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