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Series GSE121136 Query DataSets for GSE121136
Status Public on Oct 30, 2020
Title Genomic and Epigenomic EBF1 Alterations Modulate TERT Expression in Gastric Cancer [Capture-C]
Organism Homo sapiens
Experiment type Other
Summary Multiple convergent pathways resulting in inhibition of the transcription factor EBF1 is a major cause of TERT upregulation.
 
Overall design NanoChIP-seq, Capture-C, CapStarr-Seq and TF-ChIPSeq were integrated to study the regulation mechanisms of EBF1 and TERT expression in gastric cancer.
 
Contributor(s) Xing M, Ooi W, Tan P
Citation(s) 34635154
Submission date Oct 11, 2018
Last update date Nov 03, 2021
Contact name Wen Fong Ooi
E-mail(s) gis.ooiwf@gmail.com
Organization name Genome Institute of Singapore
Street address 60 Biopolis
City Singapore
ZIP/Postal code 470110
Country Singapore
 
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (4)
GSM3426713 AGS_Capture-C
GSM3426714 SNU16_Capture-C
GSM3426715 SNU484_Capture-C
This SubSeries is part of SuperSeries:
GSE121140 Genomic and Epigenomic EBF1 Alterations Modulate TERT Expression in Gastric Cancer
Relations
BioProject PRJNA495824
SRA SRP165212

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121136_RAW.tar 20.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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