|
| Status |
Public on Jan 16, 2019 |
| Title |
Histone methylation landscape in response to short hypoxic exposure |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
H3K4me3 and H3K36me3 ChIP seq in HeLa cells exposed to 0H (normoxia) or 1H of 1%O2 (hypoxia)
|
| |
|
| Overall design |
3 biological replicates, H3K4me3 ChIP seq and H3K36me3 ChIP seq in HeLa cells exposed to 0H (normoxia) or 1H of 1%O2 (hypoxia)
|
| |
|
| Contributor(s) |
Rocha S, Batie M |
| Citation(s) |
30872526 |
| |
| Submission date |
Sep 23, 2018 |
| Last update date |
Apr 17, 2019 |
| Contact name |
Sonia Rocha |
| E-mail(s) |
sonia.rocha@liverpool.ac.uk
|
| Organization name |
University of Liverool
|
| Street address |
Crown Street
|
| City |
Liverpool |
| ZIP/Postal code |
L69 7ZB |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (18)
|
|
| Relations |
| BioProject |
PRJNA492793 |
| SRA |
SRP162406 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE120339_H3K36me3_H_merge.bed.gz |
87.2 Kb |
(ftp)(http) |
BED |
| GSE120339_H3K36me3_H_merge.bw |
569.5 Mb |
(ftp)(http) |
BW |
| GSE120339_H3K36me3_down.bed.gz |
4.2 Kb |
(ftp)(http) |
BED |
| GSE120339_H3K36me3_n_merge.bed.gz |
95.3 Kb |
(ftp)(http) |
BED |
| GSE120339_H3K36me3_n_merge.bw |
613.0 Mb |
(ftp)(http) |
BW |
| GSE120339_H3K36me3_up.bed.gz |
1.5 Kb |
(ftp)(http) |
BED |
| GSE120339_H3K4me3_H_merge.bw |
426.0 Mb |
(ftp)(http) |
BW |
| GSE120339_H3K4me3_H_mergenp_peaks.narrowPeak.gz |
1.1 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE120339_H3K4me3_down.bed.gz |
5.0 Kb |
(ftp)(http) |
BED |
| GSE120339_H3K4me3_n_merge.bw |
482.7 Mb |
(ftp)(http) |
BW |
| GSE120339_H3K4me3_n_mergenp_peaks.narrowPeak.gz |
1.1 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE120339_H3K4me3_up.bed.gz |
1.5 Kb |
(ftp)(http) |
BED |
| GSE120339_Input_H_merge.bw |
450.4 Mb |
(ftp)(http) |
BW |
| GSE120339_Input_n_merge.bw |
867.6 Mb |
(ftp)(http) |
BW |
| GSE120339_RAW.tar |
3.8 Gb |
(http)(custom) |
TAR (of BED, BW, NARROWPEAK) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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