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| Status |
Public on Sep 13, 2019 |
| Title |
Profiling circular RNAs in HeLa cell |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We used RNA-seq to examine circular RNAs from RNase R treated ribo-zero RNAs in HeLa cells.
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| Overall design |
HeLa total RNA was supplied in the Ion Total RNA-Seq Kit v2, 12-Reaction Kit (Life technologies, Cat. no. 4475936) for preparing cDNA library. cDNA library preparation and sequencing were performed on Ion Torrent, and preliminary data acquisition and preprocessing was performed in house.
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| |
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| Contributor(s) |
Zhang W, Liu X, Zhou J |
| Citation(s) |
31532701 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 GM100364 |
A NOVEL CO-EXPRESSION NETWORK APPROACH THAT IS ROBUST TO GENETIC HETEROGENEITY AN |
WASHINGTON UNIVERSITY |
Weixiong Zhang |
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| |
| Submission date |
Sep 13, 2018 |
| Last update date |
May 25, 2020 |
| Contact name |
Xiaoxin Liu |
| E-mail(s) |
xiaoxinliu@wustl.edu
|
| Organization name |
WASHINGTON UNIVERSITY IN ST LOUIS
|
| Department |
Computer Science & Engineering
|
| Street address |
ONE BROOKINGS DRIVE
|
| City |
SAINT LOUIS |
| State/province |
MO |
| ZIP/Postal code |
63139 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL17303 |
Ion Torrent Proton (Homo sapiens) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA490742 |
| SRA |
SRP161705 |
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