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Series GSE119445 Query DataSets for GSE119445
Status Public on Sep 05, 2018
Title In utero heat stress alters the offspring epigenome [methylation]
Organism Bos taurus
Experiment type Methylation profiling by high throughput sequencing
Summary Exposure to intrauterine heat stress during late gestation affects offspring performance into adulthood. However, underlying mechanistic links between thermal insult in fetal life and postnatal outcomes are not completely understood. Utilizing Reduced Representation Bisulfite Sequencing, this study evaluated DNA methylation of liver and mammary gland of bull calves and heifers that were gestated under maternal conditions of heat stress or cooling, i.e., in utero heat stressed (HT) vs. in utero cooled (CL). Liver samples from bull calves (CT = 5 and HT = 4) were collected at birth while mammary gland samples from heifers (CT = 3 and HT = 3) were collected during their first lactation.
 
Overall design Nine bull calves and six heifers gestated under maternal conditions of heat stress (HT, dams had access to shade) or cooling (CL, dams had access to shade, fans and soakers) were used for this study. Both bull calves (HT = 4 and CL = 5) and heifers (HT = 3 and CL = 3) were exposed to the maternal treatment through the intrauterine environment during the last 6-7 weeks of fetal development. Liver samples were collect from bull calves inmediately after birth. Heifers were managed under identical conditions from birth through their first lactation and mammary gland samples were collected on day 21 of the first lactation, coinciding with the rising milk yield phase of the lactation cycle. Liver and mammary gland samples were subjected to DNA extraction and subsequent reduced representation bisulfite sequencing.
 
Contributor(s) Laporta J, Peñagaicano F
Citation(s) 30279561
Submission date Sep 04, 2018
Last update date Oct 12, 2018
Contact name Francisco Peñagaricano
E-mail(s) fpenagarican@wisc.edu
Organization name University of Wisconsin-Madison
Department Animal and Dairy Sciences
Street address 1675 Observatory Drive
City Madison
State/province Wisconsin
ZIP/Postal code 53706
Country USA
 
Platforms (1)
GPL23295 Illumina HiSeq 4000 (Bos taurus)
Samples (15)
GSM3374736 C9202_methylation
GSM3374737 C9214_methylation
GSM3374738 C9223_methylation
Relations
BioProject PRJNA489263
SRA SRP159548

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE119445_RAW.tar 367.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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