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GEO accession:
Series GSE118818
Query DataSets for GSE118818
Status
Public on Mar 29, 2019
Title
Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance
Platform organisms
Schizosaccharomyces pombe
;
Saccharomyces cerevisiae
Sample organism
Saccharomyces cerevisiae
Experiment type
Expression profiling by array
Genome binding/occupancy profiling by genome tiling array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31015336
Submission date
Aug 21, 2018
Last update date
Jun 28, 2019
Contact name
Markus Höpfler
E-mail(s)
hoepfler@biochem.mpg.de
Organization name
Max-Planck Institute of Biochemistry
Department
Molecular Cell Biology
Lab
Stefan Jentsch
Street address
Am Klopferspitz 18
City
Martinsried/Munich
ZIP/Postal code
82152
Country
Germany
Platforms (3)
GPL2529
[Yeast_2] Affymetrix Yeast Genome 2.0 Array
GPL16746
100304 Scer2 MS Chip Stefan Jentsch MPI Biochemistry S.cerevisiae 135K Tiling Array Version 2
GPL19756
Illumina NextSeq 500 (Saccharomyces cerevisiae)
Samples (47)
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GSM3347366
WT_ub-FK2-ChIP_meanRep1+2
GSM3347367
h2b-K123R_ub-FK2-ChIP_meanRep1+2
GSM3347368
rad6_ub-FK2-ChIP_Rep1
GSM3347369
cdc48-6_ub-FK2-ChIP_meanRep1+2
GSM3347370
WT_IgG-control-ChIP1_Rep1
GSM3347371
cdc48-3_ub-FK2-ChIP_meanRep1+2
GSM3347372
Slx8-9myc_Myc-ChIP_meanRep1+2
GSM3347373
Slx8-9myc/cdc48-3_Myc-ChIP_meanRep1+2
GSM3347374
WT_IgG-control-ChIP2_meanRep1+2
GSM3347375
WT_ub-K48-ChIP_meanRep1+2
GSM3347376
cdc48-6_ub-K48-ChIP_meanRep1+2
GSM3347377
cdc48-3_ub-K48-ChIP_meanRep1+2
GSM3347378
ufd1-2_ub-K48-ChIP_meanRep1+2
GSM3347379
ubx4_ub-K48-ChIP_meanRep1+2
GSM3347380
ubx5_ub-K48-ChIP_meanRep1+2
GSM3347381
cdc48-3/ymr111c_ub-K48-ChIP_meanRep1+2
GSM3347382
WT_Ymr111c/Euc1-ChIP_meanRep1+2
GSM3347383
ymr111c/euc1_Ymr111c/Euc1-ChIP_meanRep1+2
GSM3347384
Slx8-9myc/ymr111c/euc1_Myc-ChIP_meanRep1+2
GSM3347385
Slx8-9myc/ubc9-1_Myc-ChIP_meanRep1+2
GSM3347386
WT-untagged_Myc-ChIP_meanRep1+2
GSM3348181
WT_ExpA_Rep1
GSM3348182
WT_ExpA_Rep2
GSM3348183
WT_ExpA_Rep3
GSM3348184
ymr111c/euc1∆_ExpA_Rep1
GSM3348185
ymr111c/euc1∆_ExpA_Rep2
GSM3348186
ymr111c/euc1∆_ExpA_Rep3
GSM3348187
WT_ExpB_Rep1
GSM3348188
WT_ExpB_Rep2
GSM3348189
WT_ExpB_Rep3
GSM3348190
ymr111c/euc1-K231R_ExpB_Rep1
GSM3348191
ymr111c/euc1-K231R_ExpB_Rep2
GSM3348192
ymr111c/euc1-K231R_ExpB_Rep3
GSM3603037
WT_Exp1_Rep1
GSM3603038
WT_Exp1_Rep2
GSM3603039
WT_Exp1_Rep3
GSM3603040
ymr111c/euc1∆_Exp1_Rep1
GSM3603041
ymr111c/euc1∆_Exp1_Rep2
GSM3603042
ymr111c/euc1∆_Exp1_Rep3
GSM3603043
Control_pEUC1-EUC1_Exp2_Rep1
GSM3603044
Control_pEUC1-EUC1_Exp2_Rep2
GSM3603045
Control_pEUC1-EUC1_Exp2_Rep3
GSM3603046
YMR111C/EUC1-OE_pGAL-EUC1_Exp2_Rep1
GSM3603047
YMR111C/EUC1-OE_pGAL-EUC1_Exp2_Rep2
GSM3603048
YMR111C/EUC1-OE_pGAL-EUC1_Exp2_Rep3
GSM3609557
pGAL-empty_Ymr111c/Euc1-ChIP_meanRep1+2
GSM3609558
pGAL-EUC1_Ymr111c/Euc1-ChIP_meanRep1+2
This SuperSeries is composed of the following SubSeries:
GSE118771
Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance [ChIP-chip]
GSE118817
Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance [Gene expression]
GSE126526
Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance [RNA-Seq]
Relations
BioProject
PRJNA486898
Download family
Format
SOFT formatted family file(s)
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TXT
Supplementary file
Size
Download
File type/resource
GSE118818_RAW.tar
200.6 Mb
(http)
(custom)
TAR (of CEL, PAIR)
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