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GEO accession:
Series GSE118789
Query DataSets for GSE118789
Status
Public on Apr 16, 2019
Title
BCL6 de-repression induces the fasting transcriptome and protects from steatosis
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30983568
Submission date
Aug 20, 2018
Last update date
Apr 22, 2019
Contact name
Grant D. Barish
Organization name
Northwestern University
Department
Medicine
Street address
303 E Superior Street
City
Chicago
State/province
IL
ZIP/Postal code
60611
Country
USA
Platforms (1)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (123)
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GSM3347582
WT-Fed-Rep1-RNA-seq
GSM3347583
WT-Fed-Rep2-RNA-seq
GSM3347584
WT-Fed-Rep3-RNA-seq
GSM3347585
WT-Fed-Rep4-RNA-seq
GSM3347586
WT-Fasted-Rep1-RNA-seq
GSM3347587
WT-Fasted-Rep2-RNA-seq
GSM3347588
WT-Fasted-Rep3-RNA-seq
GSM3347589
WT-Fasted-Rep4-RNA-seq
GSM3347590
LKO-Fed-Rep1-RNA-seq
GSM3347591
LKO-Fed-Rep2-RNA-seq
GSM3347592
LKO-Fed-Rep3-RNA-seq
GSM3347593
LKO-Fed-Rep4-RNA-seq
GSM3347594
LKO-Fasted-Rep1-RNA-seq
GSM3347595
LKO-Fasted-Rep2-RNA-seq
GSM3347596
LKO-Fasted-Rep3-RNA-seq
GSM3347597
LKO-Fasted-Rep4-RNA-seq
GSM3347598
PparaKO-Fasted-Rep1-RNA-seq
GSM3347599
PparaKO-Fasted-Rep2-RNA-seq
GSM3347600
PparaKO-Fasted-Rep3-RNA-seq
GSM3347601
PparaKO-Fasted-Rep4-RNA-seq
GSM3347602
DKO-Fasted-Rep1-RNA-seq
GSM3347603
DKO-Fasted-Rep2-RNA-seq
GSM3347604
DKO-Fasted-Rep3-RNA-seq
GSM3347605
DKO-Fasted-Rep4-RNA-seq
GSM3347606
BCL6-Fed-WT-Rep1-ChIP-seq
GSM3347607
BCL6-Fed-WT-Rep2-ChIP-seq
GSM3347608
BCL6-Fed-WT-Rep3-ChIP-seq
GSM3347609
BCL6-Fed-LKO-ChIP-seq
GSM3347610
Input-Fed-WT-BCL6-ChIP-seq
GSM3347611
BCL6-Fed-C57-Rep1-ChIP-seq
GSM3347612
BCL6-Fed-C57-Rep2-ChIP-seq
GSM3347613
BCL6-Fed-C57-Rep3-ChIP-seq
GSM3347614
Input-Fed-C57-BCL6-ChIP-seq
GSM3347615
BCL6-Fast-C57-Rep1-ChIP-seq
GSM3347616
BCL6-Fast-C57-Rep2-ChIP-seq
GSM3347617
BCL6-Fast-C57-Rep3-ChIP-seq
GSM3347618
Input-Fast-C57-BCL6-ChIP-seq
GSM3347619
BCL6-Fed-PparaKO-Rep1-ChIP-seq
GSM3347620
BCL6-Fed-PparaKO-Rep2-ChIP-seq
GSM3347621
BCL6-Fed-PparaKO-Rep3-ChIP-seq
GSM3347622
Input-Fed-PparaKO-BCL6-ChIP-seq
GSM3347623
BCL6-Control-Rep1-ChIP-seq
GSM3347624
BCL6-Control-Rep2-ChIP-seq
GSM3347625
Input-Control-BCL6-ChIP-seq
GSM3347626
BCL6-PpardKO-Rep1-ChIP-seq
GSM3347627
BCL6-PpardKO-Rep2-ChIP-seq
GSM3347628
Input-PpardKO-BCL6-ChIP-seq
GSM3347629
PPARa-Fed-C57-Rep1-ChIP-seq
GSM3347630
PPARa-Fed-C57-Rep2-ChIP-seq
GSM3347631
PPARa-Fed-C57-Rep3-ChIP-seq
GSM3347632
Input-Fed-C57-PPARa-ChIP-seq
GSM3347633
PPARa-Fast-C57-Rep1-ChIP-seq
GSM3347634
PPARa-Fast-C57-Rep2-ChIP-seq
GSM3347635
PPARa-Fast-C57-Rep3-ChIP-seq
GSM3347636
Input-Fast-C57-PPARa-ChIP-seq
GSM3347637
PPARa-Fed-WT-Rep1-ChIP-seq
GSM3347638
PPARa-Fed-WT-Rep2-ChIP-seq
GSM3347639
PPARa-Fed-WT-Rep3-ChIP-seq
GSM3347640
Input-Fed-WT-PPARa-ChIP-seq
GSM3347641
PPARa-Fed-LKO-Rep1-ChIP-seq
GSM3347642
PPARa-Fed-LKO-Rep2-ChIP-seq
GSM3347643
PPARa-Fed-LKO-Rep3-ChIP-seq
GSM3347644
Input-Fed-LKO-PPARa-ChIP-seq
GSM3347645
PPARd-Fed-C57-Rep1-ChIP-seq
GSM3347646
PPARd-Fed-C57-Rep2-ChIP-seq
GSM3347647
PPARd-Fed-C57-Rep3-ChIP-seq
GSM3347648
Input-Fed-C57-PPARd-ChIP-seq
GSM3347649
PPARd-Fast-C57-Rep1-ChIP-seq
GSM3347650
PPARd-Fast-C57-Rep2-ChIP-seq
GSM3347651
PPARd-Fast-C57-Rep3-ChIP-seq
GSM3347652
Input-Fast-C57-PPARd-ChIP-seq
GSM3347653
H3K27ac-Fast-WT-Rep1-ChIP-seq
GSM3347654
H3K27ac-Fast-WT-Rep2-ChIP-seq
GSM3347655
H3K27ac-Fast-WT-Rep3-ChIP-seq
GSM3347656
Input-Fast-WT-H3K27ac-ChIP-seq
GSM3347657
H3K27ac-Fast-PparaKO-Rep1-ChIP-seq
GSM3347658
H3K27ac-Fast-PparaKO-Rep2-ChIP-seq
GSM3347659
H3K27ac-Fast-PparaKO-Rep3-ChIP-seq
GSM3347660
Input-Fast-PparaKO-H3K27ac-ChIP-seq
GSM3347661
H3K27ac-Fast-DKO-Rep1-ChIP-seq
GSM3347662
H3K27ac-Fast-DKO-Rep2-ChIP-seq
GSM3347663
H3K27ac-Fast-DKO-Rep3-ChIP-seq
GSM3347664
Input-Fast-DKO-H3K27ac-ChIP-seq
GSM3728062
H3K27ac-Fed-WT-Rep1-ChIP-seq II
GSM3728063
H3K27ac-Fed-WT-Rep2-ChIP-seq II
GSM3728064
H3K27ac-Fed-WT-Rep3-ChIP-seq II
GSM3728065
Input-Fed-WT-H3K27ac-ChIP-seq II
GSM3728066
H3K27ac-Fed-LKO-Rep1-ChIP-seq II
GSM3728067
H3K27ac-Fed-LKO-Rep2-ChIP-seq II
GSM3728068
H3K27ac-Fed-LKO-Rep3-ChIP-seq II
GSM3728069
Input-Fed-LKO-H3K27ac-ChIP-seq II
GSM3728070
HDAC3-Fed-WT-Rep1-ChIP-seq II
GSM3728071
HDAC3-Fed-WT-Rep2-ChIP-seq II
GSM3728072
HDAC3-Fed-WT-Rep3-ChIP-seq II
GSM3728073
HDAC3-Fed-LKO-Rep1-ChIP-seq II
GSM3728074
HDAC3-Fed-LKO-Rep2-ChIP-seq II
GSM3728075
HDAC3-Fed-LKO-Rep3-ChIP-seq II
GSM3728076
SMRT-Fed-WT-Rep1-ChIP-seq II
GSM3728077
SMRT-Fed-WT-Rep2-ChIP-seq II
GSM3728078
SMRT-Fed-WT-Rep3-ChIP-seq II
GSM3728079
SMRT-Fed-LKO-Rep1-ChIP-seq II
GSM3728080
SMRT-Fed-LKO-Rep2-ChIP-seq II
GSM3728081
SMRT-Fed-LKO-Rep3-ChIP-seq II
GSM3728082
NCoR-Fed-WT-Rep1-ChIP-seq II
GSM3728083
NCoR-Fed-WT-Rep2-ChIP-seq II
GSM3728084
NCoR-Fed-WT-Rep3-ChIP-seq II
GSM3728085
NCoR-Fed-LKO-Rep1-ChIP-seq II
GSM3728086
NCoR-Fed-LKO-Rep2-ChIP-seq II
GSM3728087
NCoR-Fed-LKO-Rep3-ChIP-seq II
GSM3728088
Input-Fed-WT-SMRT-NCoR-HDAC3-ChIP-seq II
GSM3728089
Input-Fed-LKO-SMRT-NCoR-HDAC3-ChIP-seq II
GSM3728090
PPARd-Fast-WT-Rep1-ChIP-seq II
GSM3728091
PPARd-Fast-WT-Rep2-ChIP-seq II
GSM3728092
PPARd-Fast-WT-Rep3-ChIP-seq II
GSM3728093
Input-Fast-WT-PPARd-ChIP-seq II
GSM3728094
PPARd-Fast-PparaKO-Rep1-ChIP-seq II
GSM3728095
PPARd-Fast-PparaKO-Rep2-ChIP-seq II
GSM3728096
PPARd-Fast-PparaKO-Rep3-ChIP-seq II
GSM3728097
Input-Fast-PparaKO-PPARd-ChIP-seq II
GSM3728098
PPARd-Fast-DKO-Rep1-ChIP-seq II
GSM3728099
PPARd-Fast-DKO-Rep2-ChIP-seq II
GSM3728100
PPARd-Fast-DKO-Rep3-ChIP-seq II
GSM3728101
Input-Fast-DKO-PPARd-ChIP-seq II
This SuperSeries is composed of the following SubSeries:
GSE118787
BCL6 de-repression induces the fasting transcriptome and protects from steatosis (RNA-Seq)
GSE118788
BCL6 de-repression induces the fasting transcriptome and protects from steatosis (ChIP-Seq I)
GSE129920
BCL6 de-repression induces the fasting transcriptome and protects from steatosis (ChIP-Seq II)
Relations
BioProject
PRJNA486799
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