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Status |
Public on Aug 13, 2021 |
Title |
Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. |
Organism |
Arabidopsis thaliana |
Experiment type |
Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
34589093 |
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Submission date |
Aug 13, 2018 |
Last update date |
Oct 06, 2021 |
Contact name |
Robert J. Ferl |
E-mail(s) |
ferllabuf@gmail.com
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Phone |
352-273-8030
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Organization name |
University of Florida
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Department |
Horticultural Sciences
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Lab |
Ferl's lab
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Street address |
1301 Fifield Hall PO Box 110690
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City |
Gainesville |
State/province |
Florida |
ZIP/Postal code |
32611 |
Country |
USA |
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Platforms (1) |
GPL21179 |
Illumina HiSeq 3000 (Arabidopsis thaliana) |
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Samples (96)
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GSM3330761 |
Flight, Col-0, Leaves, replicate 4 |
GSM3330762 |
Flight, Col-0, Roots, replicate 1 |
GSM3330763 |
Flight, Col-0, Roots, replicate 2 |
GSM3330764 |
Flight, Col-0, Roots, replicate 3 |
GSM3330765 |
Flight, Col-0, Roots, replicate 4 |
GSM3330766 |
Ground control, Col-0, Leaves, replicate 1 |
GSM3330767 |
Ground control, Col-0, Leaves, replicate 2 |
GSM3330768 |
Ground control, Col-0, Leaves, replicate 3 |
GSM3330769 |
Ground control, Col-0, Leaves, replicate 4 |
GSM3330770 |
Ground control, Col-0, Roots, replicate 1 |
GSM3330771 |
Ground control, Col-0, Roots, replicate 2 |
GSM3330772 |
Ground control, Col-0, Roots, replicate 3 |
GSM3330773 |
Ground control, Col-0, Roots, replicate 4 |
GSM3330774 |
Flight, elp2-5, Leaves, replicate 1 |
GSM3330775 |
Flight, elp2-5, Leaves, replicate 2 |
GSM3330776 |
Flight, elp2-5, Leaves, replicate 3 |
GSM3330777 |
Flight, elp2-5, Leaves, replicate 4 |
GSM3330778 |
Flight, elp2-5, Roots, replicate 1 |
GSM3330779 |
Flight, elp2-5, Roots, replicate 2 |
GSM3330780 |
Flight, elp2-5, Roots, replicate 3 |
GSM3330781 |
Flight, elp2-5, Roots, replicate 4 |
GSM3330782 |
Ground control, elp2-5, Leaves, replicate 1 |
GSM3330783 |
Ground control, elp2-5, Leaves, replicate 2 |
GSM3330784 |
Ground control, elp2-5, Leaves, replicate 3 |
GSM3330785 |
Ground control, elp2-5, Leaves, replicate 4 |
GSM3330786 |
Ground control, elp2-5, Roots, replicate 1 |
GSM3330787 |
Ground control, elp2-5, Roots, replicate 2 |
GSM3330788 |
Ground control, elp2-5, Roots, replicate 3 |
GSM3330789 |
Ground control, elp2-5, Roots, replicate 4 |
GSM3330790 |
Flight, met1-7, Leaves, replicate 1 |
GSM3330791 |
Flight, met1-7, Leaves, replicate 2 |
GSM3330792 |
Flight, met1-7, Leaves, replicate 3 |
GSM3330793 |
Flight, met1-7, Leaves, replicate 4 |
GSM3330794 |
Flight, met1-7, Roots, replicate 1 |
GSM3330795 |
Flight, met1-7, Roots, replicate 2 |
GSM3330796 |
Flight, met1-7, Roots, replicate 3 |
GSM3330797 |
Flight, met1-7, Roots, replicate 4 |
GSM3330798 |
Ground control, met1-7, Leaves, replicate 1 |
GSM3330799 |
Ground control, met1-7, Leaves, replicate 2 |
GSM3330800 |
Ground control, met1-7, Leaves, replicate 3 |
GSM3330801 |
Ground control, met1-7, Leaves, replicate 4 |
GSM3330802 |
Ground control, met1-7, Roots, replicate 1 |
GSM3330803 |
Ground control, met1-7, Roots, replicate 2 |
GSM3330804 |
Ground control, met1-7, Roots, replicate 3 |
GSM3330805 |
Ground control, met1-7, Roots, replicate 4 |
GSM3331071 |
Col-0, Leaves, Flight, replicate 1 [CLF1] |
GSM3331072 |
Col-0, Leaves, Flight, replicate 2 [CLF2] |
GSM3331073 |
Col-0, Leaves, Flight, replicate 3 [CLF3] |
GSM3331074 |
Col-0, Leaves, Flight, replicate 4 [CLF4] |
GSM3331075 |
Col-0, Roots, Flight, replicate 1 [CRF1] |
GSM3331076 |
Col-0, Roots, Flight, replicate 2 [CRF2] |
GSM3331077 |
Col-0, Roots, Flight, replicate 3 [CRF3] |
GSM3331078 |
Col-0, Roots, Flight, replicate 4 [CRF4] |
GSM3331079 |
Col-0, Leaves, Ground control, replicate 1 [CLG1] |
GSM3331080 |
Col-0, Leaves, Ground control, replicate 2 [CLG2] |
GSM3331081 |
Col-0, Leaves, Ground control, replicate 3 [CLG3] |
GSM3331082 |
Col-0, Leaves, Ground control, replicate 4 [CLG4] |
GSM3331083 |
Col-0, Roots, Ground control, replicate 1 [CRG1] |
GSM3331084 |
Col-0, Roots, Ground control, replicate 2 [CRG2] |
GSM3331085 |
Col-0, Roots, Ground control, replicate 3 [CRG3] |
GSM3331086 |
Col-0, Roots, Ground control, replicate 4 [CRG4] |
GSM3331087 |
elp2-5, Leaves, Flight, replicate 1 [ELF1] |
GSM3331088 |
elp2-5, Leaves, Flight, replicate 2 [ELF2] |
GSM3331089 |
elp2-5, Leaves, Flight, replicate 3 [ELF3] |
GSM3331090 |
elp2-5, Leaves, Flight, replicate 4 [ELF4] |
GSM3331091 |
elp2-5, Roots, Flight, replicate 1 [ERF1] |
GSM3331092 |
elp2-5, Roots, Flight, replicate 2 [ERF2] |
GSM3331093 |
elp2-5, Roots, Flight, replicate 3 [ERF3] |
GSM3331094 |
elp2-5, Roots, Flight, replicate 4 [ERF4] |
GSM3331095 |
elp2-5, Leaves, Ground control, replicate 1 [ELG1] |
GSM3331096 |
elp2-5, Leaves, Ground control, replicate 2 [ELG2] |
GSM3331097 |
elp2-5, Leaves, Ground control, replicate 3 [ELG3] |
GSM3331098 |
elp2-5, Leaves, Ground control, replicate 4 [ELG4] |
GSM3331099 |
elp2-5, Roots, Ground control, replicate 1 [ERG1] |
GSM3331100 |
elp2-5, Roots, Ground control, replicate 2 [ERG2] |
GSM3331101 |
elp2-5, Roots, Ground control, replicate 3 [ERG3] |
GSM3331102 |
elp2-5, Roots, Ground control, replicate 4 [ERG4] |
GSM3331103 |
met1-7, Leaves, Flight, replicate 1 [MLF1] |
GSM3331104 |
met1-7, Leaves, Flight, replicate 2 [MLF2] |
GSM3331105 |
met1-7, Leaves, Flight, replicate 3 [MLF3] |
GSM3331106 |
met1-7, Leaves, Flight, replicate 4 [MLF4] |
GSM3331107 |
met1-7, Roots, Flight, replicate 1 [MRF1] |
GSM3331108 |
met1-7, Roots, Flight, replicate 2 [MRF2] |
GSM3331109 |
met1-7, Roots, Flight, replicate 3 [MRF3] |
GSM3331110 |
met1-7, Roots, Flight, replicate 4 [MRF4] |
GSM3331111 |
met1-7, Leaves, Ground control, replicate 1 [MLG1] |
GSM3331112 |
met1-7, Leaves, Ground control, replicate 2 [MLG2] |
GSM3331113 |
met1-7, Leaves, Ground control, replicate 3 [MLG3] |
GSM3331114 |
met1-7, Leaves, Ground control, replicate 4 [MLG4] |
GSM3331115 |
met1-7, Roots, Ground control, replicate 1 [MRG1] |
GSM3331116 |
met1-7, Roots, Ground control, replicate 2 [MRG2] |
GSM3331117 |
met1-7, Roots, Ground control, replicate 3 [MRG3] |
GSM3331118 |
met1-7, Roots, Ground control, replicate 4 [MRG4] |
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This SuperSeries is composed of the following SubSeries: |
GSE118483 |
Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [Bisulfite-Seq] |
GSE118502 |
Characterizing Epigenetic Changes in Methylation Mutants (elp2-5 and met1-7) in Response to Spaceflight. [RNA-Seq] |
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Relations |
BioProject |
PRJNA486536 |
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