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Status |
Public on Oct 02, 2019 |
Title |
Integrated Paired-end Enhancer Profiling and Whole-Genome Sequencing Reveals Recurrent CCNE1 and IGF2 Enhancer Hijacking in Primary Gastric Adenocarcinoma (Hi-C) |
Organism |
Homo sapiens |
Experiment type |
Other
|
Summary |
H3K27ac paired-end NanoChIP-seq, whole-genome sequecing, RNA-seq and Hi-C were integrated to reveal tumor-associated structural variants contributing to gastric cancer
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Overall design |
Hi-C profiles were generated to interrogate for chromatin interactions and topological-associated domains.
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Contributor(s) |
Fong OW, Lim K, Tan P |
Citation(s) |
31542774 |
Submission date |
Aug 10, 2018 |
Last update date |
Oct 02, 2019 |
Contact name |
Wen Fong Ooi |
E-mail(s) |
gis.ooiwf@gmail.com
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Organization name |
Genome Institute of Singapore
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Street address |
60 Biopolis
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City |
Singapore |
ZIP/Postal code |
470110 |
Country |
Singapore |
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Platforms (1) |
GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
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Samples (3) |
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This SubSeries is part of SuperSeries: |
GSE118392 |
Integrated Paired-end Enhancer Profiling and Whole-Genome Sequencing Reveals Recurrent CCNE1 and IGF2 Enhancer Hijacking in Primary Gastric Adenocarcinoma |
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Relations |
BioProject |
PRJNA485437 |
SRA |
SRP157048 |