|
| Status |
Public on Aug 01, 2019 |
| Title |
From gene networks to network motif dynamics: how the presense of positive feed-back and -forward loops between PERIANTHIA, WUSCHEL-RELATED HOMEOBOX5 and GRF-INTERACTING FACTOR 1 modulates gene expression and function in the Arabidopsis roots. |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We isolated QC and CEI cells and obtained their cell-type specific transcriptional profiles in a WT and in a wox5 mutant background by sorting GFP+ cells marked with pWOX5::GFP and pCYCD6::GFP.
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| |
|
| Overall design |
Seedlings were grown for 5 days. Cells expressing WOX5::GFP and CYCD6::GUS-GFP were collected by FACS. RNA was extracted from the collected cells.
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| |
|
| Contributor(s) |
Clark NM, Fisher AP, Sozzani R |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 03, 2018 |
| Last update date |
Aug 01, 2019 |
| Contact name |
Adam Fisher |
| E-mail(s) |
apfishe3@ncsu.edu
|
| Organization name |
North Carolina State University
|
| Street address |
112 Derieux Place
|
| City |
Raleigh |
| State/province |
North Carolina |
| ZIP/Postal code |
27607 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
|
| Samples (13)
|
| GSM3318603 |
Arabidopsis CEI marker_WT genetic background_first biological replicate |
| GSM3318604 |
Arabidopsis CEI marker_WT genetic background_second biological replicate |
| GSM3318605 |
Arabidopsis CEI marker_WT genetic background_third biological replicate |
| GSM3318606 |
Arabidopsis CEI marker_wox5-1 mutant genetic background_first biological replicate |
| GSM3318607 |
Arabidopsis CEI marker_wox5-1 mutant genetic background_second biological replicate |
| GSM3318608 |
Arabidopsis CEI marker_wox5-1 mutant genetic background_third biological replicate |
| GSM3318609 |
Arabidopsis QC marker_WT genetic background_first biological replicate |
| GSM3318610 |
Arabidopsis QC marker_WT genetic background_second biological replicate |
| GSM3318611 |
Arabidopsis QC marker_WT genetic background_third biological replicate |
| GSM3318612 |
Arabidopsis QC marker_wox5-1 mutant genetic background_first biological replicate |
| GSM3318613 |
Arabidopsis QC marker_wox5-1 mutant genetic background_second biological replicate |
| GSM3318614 |
Arabidopsis QC marker_wox5-1 mutant genetic background_third biological replicate |
| GSM3318615 |
Arabidopsis QC marker_wox5-1 mutant genetic background_forth biological replicate |
|
| Relations |
| BioProject |
PRJNA484410 |
| SRA |
SRP156316 |
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