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Series GSE117966 Query DataSets for GSE117966
Status Public on Aug 02, 2018
Title Oxygen Controls Metabolic Flux and Influences Global Acetylation and Methylation in Human Pluripotent Stem Cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: The goals of this study are to compare the effects of 5% and 20% oxygen culture on human embryonic stem cells, inlcuding the impact on their transcriptomes.
 
Overall design mRNA profiles of two human embryonic stem cell lines (MEL1 and MEL2) cultured long term at 5% and 20% oxygen.
 
Contributor(s) Lees JG, Cliff TS, Gammilonghi A, Ryall JG, Dalton S, Gardner DK, Harvey AJ
Citation(s) 31236115
Submission date Aug 01, 2018
Last update date Jul 02, 2019
Contact name Jarmon Gerald Lees
E-mail(s) jarmon.lees@unimelb.edu.au
Organization name University of Melbourne
Street address Royal Parade
City Melbourne
State/province Victoria
ZIP/Postal code 3010
Country Australia
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (12)
GSM3316240 MEL1 5% O2_1
GSM3316241 MEL1 5% O2_2
GSM3316242 MEL1 5% O2_3
Relations
BioProject PRJNA483872
SRA SRP155937

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117966_Galaxy248-DESeq2_result_file_on_data_198_6_4_v_192_90_88_MEL1_5v20_O2.csv.gz 872.3 Kb (ftp)(http) CSV
GSE117966_Galaxy249-DESeq2_result_file_on_data_200_202_v_206_208_MEL2_5v20_O2.csv.gz 789.7 Kb (ftp)(http) CSV
GSE117966_Galaxy252-DESeq2_result_file_on_data_MEL1_v_MEL2_at_5_oxygen.csv.gz 795.4 Kb (ftp)(http) CSV
GSE117966_Galaxy253-DESeq2_result_file_on_MEL1_v_MEL2_at_20_oxygen.csv.gz 790.8 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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