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| Status |
Public on Nov 15, 2018 |
| Title |
RAT-seq mapping of the FLI1 exonic circular RNA FECR1 target gene network in MDA-MB231 breast cancer cells |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
FECR1 is an exonic circular RNA of the proto-oncogene FLI1. FECR1 is identified as a molecular component in the FLI1 promoter chromatin complex. To study its function in breast cancer, we utilized a RNA reverse transcription-associated trap sequencing (RAT-Seq) approach to map the DNA binding targets in MDA-231 cells.
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| Overall design |
RAT-Seq was utilized to generate the database to map the regulatory element network of FECR1.
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| Contributor(s) |
Chen N, Cui J, Hu J |
| Citation(s) |
30537986 |
| |
| Submission date |
Jul 26, 2018 |
| Last update date |
Mar 27, 2019 |
| Contact name |
Jifan Hu |
| E-mail(s) |
jifan@stanford.edu
|
| Phone |
6508523175
|
| Organization name |
Stanford University Medical School
|
| Department |
Palo Alto Veterans Institute for Research
|
| Lab |
Bldg 100, Room E4-200
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| Street address |
3801 Miranda Ave, Bldg 100, Room E4-200
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| City |
Palo Alto |
| State/province |
CA |
| ZIP/Postal code |
94304 |
| Country |
USA |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA483028 |
| SRA |
SRP155394 |
