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Series GSE117532 Query DataSets for GSE117532
Status Public on Jul 21, 2019
Title Host susceptibility to recurrent cystitis is shaped by bladder TNF-alpha signaling dynamics
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Urinary tract infections (UTI) are common and recurrent. Both host genetics and UTI history impact susceptibility to recurrent UTI (rUTI) in women and in animal models. To identify shared patterns of host response that correlate with susceptibility, we investigated bladder inflammatory and transcriptional kinetics in acute and rUTI models. We found that TNFɑ signaling kinetics differed with mouse strain and infection history. Mice resistant to severe UTI/rUTI displayed a robust TNFɑ-dependent inflammation during the first 6 hours of acute cystitis, which waned by 24 hours; mice that are susceptible varied in their early responses but were prone to severe inflammation at 24 hours post-infection. Depletion of TNFɑ in an rUTI model revealed that early TNFɑ signaling promoted colonization resistance via exfoliation of infected bladder cells, but prolonged TNFɑ signaling exacerbated inflammation, thereby worsening infection. Host genetics and disease history impacts susceptibility by regulating the kinetics of a common TNFɑ pathway.
 
Overall design Whole bladder transcritpomes of mice from different genetic background or of different UTI histories were compared upon UPEC infection for different period of time with PBS mock infected counterparts.
 
Contributor(s) Yu L, O'Brien V, Dorsey D, Livny J, Roberson E, Colonna M, Caparon M, Hultgren SJ, Hannan T
Citation(s) 31429405
Submission date Jul 23, 2018
Last update date Aug 26, 2019
Contact name Lu Yu
E-mail(s) soslucysos@gmail.com
Organization name Washington University in St Louis
Department Molecular Microbiology
Lab Scott Hultgren
Street address 4905 Children’s Place/305 N. Euclid, 10260 McDonnell Pediatric Research Building
City St. Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (146)
GSM3302553 c57bl6j_pbs_1
GSM3302554 c57bl6j_pbs_2
GSM3302555 c57bl6j_pbs_3
Relations
BioProject PRJNA482406
SRA SRP154905

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117532_RAW.tar 142.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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