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Series GSE117377 Query DataSets for GSE117377
Status Public on Dec 19, 2018
Title Genetic models reveal cis and trans immune-regulatory activities for lincRNA-Cox2 in vivo (macrophages)
Organism Mus musculus
Experiment type Other
Summary Here we amplified a region in exon 5 of Ptgs2 that contains SNPs to allow us to differenitate between the C57 allele and the MOLF allele
Overall design primers were designed to a region in exon 5 that contained SNPs what once sequenced could be separated into C57 and MOLF alleles. Regions were amplified from a WT/MOLF and LincRNA-Cox2/MOLF macrophages and Mi-seq was performed. From the fastq files sequences with SNPs were grepped out from the file and counted to determine the number of reads that corresponded to the C57 (WT or KO allele) versus the MOLF
Contributor(s) Carpenter S
Citation(s) 30404006, 35365562
Submission date Jul 19, 2018
Last update date May 05, 2022
Contact name Susan Carpenter
Phone 8315028155
Organization name University of California Santa Cruz
Department Molecular Cell and Developmental Biology
Lab Carpenter Lab
Street address 1156 High Street
City Santa Cruz
State/province CA
ZIP/Postal code 95064
Country USA
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (4)
GSM3293598 SC_01_S21
GSM3293599 SC_02_S22
GSM3293600 SC_03_S23
This SubSeries is part of SuperSeries:
GSE117379 Genetic models reveal cis and trans immune-regulatory activities for lincRNA-Cox2 in vivo
BioProject PRJNA481949
SRA SRP154449

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117377_2018_07_05_Analysis_Ptgs2_last-exon_B6_vs_MOLF_SC.xlsx.gz 10.0 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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