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Series GSE116757 Query DataSets for GSE116757
Status Public on Jul 06, 2022
Title Comparison of the Gr-1+ and Gr-1- monocyte gene expression in cell-type specific Fcgr2 deficiency on the Yaa backgound
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We generated 5 mouse lines:(1) Fcgr2 -/-.Yaa,(2)CD19Cre;Fcgr2 fl/fl.Yaa, (3)CEBPaCre;Fcgr2 fl/fl.Yaa, (4)CD11cCre;Fcgr2 fl/fl.Yaa, and (5)Fcgr2 fl/fl.Yaa. Peripheral blood mononuclear cells from each mouse at 8 months old were collected and sorted by CD11b and Gr-1 cell surface markers. Sorted cells were subjected to RNA extraction and RNA-seq analysis
Overall design Either Gr-1+CD11b+ or Gr-1-CD11b+ cell mRNA profiles of various 8 month-old mice were generated by deep sequencing using HiSeq 1500 sequencer (Illumina)
Contributor(s) Fukuyama H, Sato R
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Submission date Jul 07, 2018
Last update date Jul 08, 2022
Contact name Hidehiro FUKUYAMA
Organization name RIKEN
Department IMS
Lab Lymphocyte Differentiation
Street address 1-7-22, Suehirocho, Tsurumi-ku
City Yokohama
State/province Kanagawa
ZIP/Postal code 230-0045
Country Japan
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (9)
GSM3260149 CD32null.Yaa; Gr+CD11b+ #2
GSM3260150 CD19CreCD32Flox.Yaa; Gr+CD11b+
GSM3260151 CD19CreCD32Flox.Yaa; Gr-CD11b+
BioProject PRJNA480069
SRA SRP152622

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116757_RAW.tar 1.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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