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| Status |
Public on Jun 21, 2019 |
| Title |
Changes in mitochondrial function and browning markers of subcutaneous and visceral white adipose tissue of C57BL/6j mice from weaning to young adulthood |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
White adipose tissue (WAT) distribution and WAT mitochondrial function contribute to total body metabolic health throughout life, but little is known about changes following weaning. We therefore assessed changes in mitochondrial density and function in WAT depots of young mice. Inguinal (ING), epididymal (EPI) and retroperitoneal (RP) WAT of 21, 42 and 98 days old C57BL/6j mice was collected. Mitochondrial density (citrate synthase (CS), mtDNA) and function (subunits of oxidative phosphorylation complexes (OXPHOS)) markers were analysed, together with gene expression of browning markers (Ucp1, Cidea). RNA of ING WAT of 21 and 98 old mice was sequenced to further investigate functional changes of the mitochondria and alterations in cell populations. CS levels decreased significantly over time in all depots. ING showed most pronounced changes, including significantly decreased levels of OXPHOS complex I, II and III subunits and gene expression of Ucp1 (PN21-42 and PN42-98) and Cidea (PN42-98). White adipocyte markers were higher at PN98 in ING WAT. The mitochondrial functional profile changed over time from ‘growing’ mitochondria focused on ATP production (and dissipation), to more steady-state mitochondria with more diverse functions and higher biosynthesis. Mitochondrial density and energy metabolism markers declined in all three depots over time after weaning. This was most pronounced in ING WAT where it was associated with reduced browning markers, increased whitening and an altered metabolism. In particular the PN21-42 period may provide a time window to study mitochondrial adaptation and effects of nutritional exposures relevant for later life metabolic health.
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| Overall design |
RNA samples of inguinal white adipose tissue from 21 and 98 days old mice (n = 4 per time point) were used for mRNA sequencing analysis (NXT-Dx, Gent, Belgium). Data analysis included contrast analysis (R package Limma) between PN21 and PN98, omitting transcripts with a FPKM (fragments per kilobase million) of zero in at least one of the samples and including transcripts with an average FPKM >2 at PN21 or PN98.
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| Contributor(s) |
Kodde A, Engels E, Oosting A, van Limpt K, van der Beek EM, Keijer J |
| Citation(s) |
31354508 |
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| Submission date |
Jun 26, 2018 |
| Last update date |
Sep 20, 2019 |
| Contact name |
Andrea Kodde |
| E-mail(s) |
andrea.kodde@danone.com
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| Organization name |
Danone Nutricia Research
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| Street address |
Uppsalalaan 12
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| City |
Utrecht |
| ZIP/Postal code |
3584 CT |
| Country |
Netherlands |
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| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA478063 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE116313_Changes_in_mito_function-RNA_seq_data_table.txt.gz |
8.9 Mb |
(ftp)(http) |
TXT |
| GSE116313_contrasts_98d_vs_21d_p0.05_5040transcripts_12may2017.txt.gz |
756.9 Kb |
(ftp)(http) |
TXT |
| Raw data are available in SRA |
| Processed data are available on Series record |
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