|
| Status |
Public on Jan 31, 2019 |
| Title |
Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming II |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We collected duplicate samples at the various time points, generated single cell suspensions and performed scRNA-Seq. We also collected samples from established iPSC lines reprogrammed from the same MEFs, maintained in either 2i or serum conditions. Overall, we profiled ~250,000 cells.
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| |
|
| Overall design |
We collected scRNA-seq profiles of 250,00 cells across a 18-day time course of iPSC induction, under two conditions: 2i and serum
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| |
|
| Contributor(s) |
Shu J, Tabaka M |
| Citation(s) |
30712874 |
| |
| Submission date |
Jun 18, 2018 |
| Last update date |
Mar 01, 2019 |
| Contact name |
Marcin Tabaka |
| E-mail(s) |
mtabaka@ichf.edu.pl
|
| Organization name |
International Centre for Translational Eye Research
|
| Lab |
Tabaka Lab
|
| Street address |
Kasprzaka 44/52
|
| City |
Warsaw |
| ZIP/Postal code |
01224 |
| Country |
Poland |
| |
|
| Platforms (1) |
|
| Samples (126)
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| This SubSeries is part of SuperSeries: |
| GSE122662 |
Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming |
|
| Relations |
| BioProject |
PRJNA476566 |
| SRA |
SRP150764 |
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