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| Status |
Public on Jun 02, 2020 |
| Title |
SPECIFIC BIOMARKERS ASSOCIATED WITH CHRONIC RENAL LESIONS IN IGA NEPHROPATHY PATIENTS. A MULTICENTER STUDY |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
The histologic diagnosis of idiopathic IgA Nephopathy (IgAN) is based o renal lesions scores. Aim of our study was to identify specific gene expression changes that characterize active renal lesions that may be more responsive to immunosuppressive therapy than chronic lesions. Total RNA was extracted from archival FFPE renal tissue samples of 55 IgAN patients, 31 non-IgAN patients. IgAN patients were accurately stratified based on the LUMPED classifications. Genome-wide gene expression profiles were generated and Oneway ANOVA with tukeyHSD post hoc testing was used to identify specific transcripts associated with active and chronic renal lesions in IgAN. RT-PCR was used to validate selected transcripts. Immunohistochemistry (IHC) was used to evaluate specific protein expression in biopsy specimens. Bioinfomatic analysis identified 183 genes with a Fold Change > 1.5 exclusively modulated in IgAN biopsies with active lesions and 162 genes with Fold Change > 1.5 exclusively modulated in IgAN biopsies with chronic lesions. These genes belonged to renal cellular damage and immune system regulatory pathways. To establish the validity of gene expression determined by microarray analysis, we performed RT-PCR on genes that were putatively involved in generating active and chronic lesions that may be involved in activating local inflammatory response and contributing to renal damage. Validated transcripts were also confirmed at protein level with IHC on kidney biopsy specimens. Transcriptomics on FFPE renal biopsies integrates histomorphologic renal lesions. Our study identifies specific gene expression changes involved in active and chronic lesions at the time of renal biopsy. This novel information may be used for personalized therapy through a system pharmacology approach to identify targeted molecules able to revert aberrant expression networks characterizing active and chronic lesions.
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| Overall design |
Total RNA obtained from renal biopsy of IgAn patients compared with healthy tissue and on the basis of their classification.
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| Contributor(s) |
Sallustio F, Serino G, Curci C, Cox SN, Schena FP |
| Citation missing |
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| Submission date |
Jun 15, 2018 |
| Last update date |
Jun 02, 2020 |
| Contact name |
Fabio Sallustio |
| E-mail(s) |
f.sallustio@nephro.uniba.it
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| Organization name |
University of Bari
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| Street address |
Piazza G. Cesare N°11
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| City |
Bari |
| State/province |
Bari |
| ZIP/Postal code |
70124 |
| Country |
Italy |
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| Platforms (1) |
| GPL14951 |
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip |
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| Samples (86)
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| Relations |
| BioProject |
PRJNA476318 |
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