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GEO accession:
Series GSE115727
Query DataSets for GSE115727
Status
Public on Aug 31, 2018
Title
The RNA exosome contributes to gene expression regulation during stem cell differentiation
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30212902
Submission date
Jun 13, 2018
Last update date
Mar 25, 2019
Contact name
Evdoxia Karadoulama
E-mail(s)
evka@mbg.au.dk
Organization name
Aarhus University
Department
Molecular Biology and Genetics
Lab
Torben Heick Jensen
Street address
C.F. Møllers Alle 3
City
Aarhus
ZIP/Postal code
8000
Country
Denmark
Platforms (3)
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
Samples (42)
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GSM3188172
Scr(control) mESC total RNA replicate 1 [CAGE-Seq]
GSM3188173
Scr(control) mESC total RNA replicate 2 [CAGE-Seq]
GSM3188174
Scr(control) EBd3 total RNA replicate 1 [CAGE-Seq]
GSM3188175
Scr(control) EBd3 total RNA replicate 2 [CAGE-Seq]
GSM3188176
Rrp40 mESC total RNA replicate 1 [CAGE-Seq]
GSM3188177
Rrp40 mESC total RNA replicate 2 [CAGE-Seq]
GSM3188178
Rrp40 EBd3 total RNA replicate 1 [CAGE-Seq]
GSM3188179
Rrp40 EBd3 total RNA replicate 2 [CAGE-Seq]
GSM3188207
SCR_ESC_1 [PRO-Seq]
GSM3188208
SCR_ESC_2 [PRO-Seq]
GSM3188209
SCR_EBd3_1 [PRO-Seq]
GSM3188210
SCR_EBd3_2 [PRO-Seq]
GSM3188211
RRP40_ESC_1 [PRO-Seq]
GSM3188212
RRP40_ESC_2 [PRO-Seq]
GSM3188213
RRP40_EBd3_1 [PRO-Seq]
GSM3188214
RRP40_EBd3_2 [PRO-Seq]
GSM3188215
Scr-ESC-rep-1 [RNA-Seq]
GSM3188216
Scr-ESC-rep-2 [RNA-Seq]
GSM3188217
Scr-ESC-rep-3 [RNA-Seq]
GSM3188218
Scr-EBd3-rep-1 [RNA-Seq]
GSM3188219
Scr-EBd3-rep-2 [RNA-Seq]
GSM3188220
Scr-EBd3-rep-3 [RNA-Seq]
GSM3188221
Rrp40-ESC-rep-1 [RNA-Seq]
GSM3188222
Rrp40-ESC-rep-2 [RNA-Seq]
GSM3188223
Rrp40-ESC-rep-3 [RNA-Seq]
GSM3188224
Rrp40-EBd3-rep-1 [RNA-Seq]
GSM3188225
Rrp40-EBd3-rep-2 [RNA-Seq]
GSM3188226
Rrp40-EBd3-rep-3 [RNA-Seq]
GSM3317700
Rbm7-ESC-rep-1 [CAGE-Seq]
GSM3317701
Rbm7-ESC-rep-2 [CAGE-Seq]
GSM3317702
Rbm7-EBd3-rep-1 [CAGE-Seq]
GSM3317703
Rbm7-EBd3-rep-2 [CAGE-Seq]
GSM3317798
RBM7_ESC_1 [PRO-Seq]
GSM3317799
RBM7_ESC_2 [PRO-Seq]
GSM3317800
RBM7_EBd3_1 [PRO-Seq]
GSM3317801
RBM7_EBd3_2 [PRO-Seq]
GSM3317825
Rbm7-ESC-rep-1 [RNA-Seq]
GSM3317826
Rbm7-ESC-rep-2 [RNA-Seq]
GSM3317827
Rbm7-ESC-rep-3 [RNA-Seq]
GSM3317828
Rbm7-EBd3-rep-1 [RNA-Seq]
GSM3317829
Rbm7-EBd3-rep-2 [RNA-Seq]
GSM3317830
Rbm7-EBd3-rep-3 [RNA-Seq]
This SuperSeries is composed of the following SubSeries:
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GSE115710
The RNA exosome contributes to gene expression regulation during stem cell differentiation [CAGE]
GSE115713
The RNA exosome contributes to gene expression regulation during stem cell differentiation [PRO-Seq]
GSE115714
The RNA exosome contributes to gene expression regulation during stem cell differentiation [RNA-Seq]
GSE118043
The RNA exosome contributes to gene expression regulation during stem cell differentiation [CAGE 2]
GSE118052
The RNA exosome contributes to gene expression regulation during stem cell differentiation [PRO-Seq 2]
GSE118054
The RNA exosome contributes to gene expression regulation during stem cell differentiation [RNA-Seq 2]
Relations
BioProject
PRJNA475875
Download family
Format
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Supplementary file
Size
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File type/resource
GSE115727_RAW.tar
5.5 Gb
(http)
(custom)
TAR (of BW)
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