|
| Status |
Public on Aug 07, 2019 |
| Title |
Genome wide chromatin changes in TC-32 and TC-71 Ewing sarcoma cell lines. |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We performed ChIPseq on histone modification marks, transcriptional factors and chromatin architectural proteins in TC-32 and TC-71 Ewing sarcoma cell lines.
|
| |
|
| Overall design |
ChIPseq profiles of TC-32 and TC-71 Ewing sarcoma cell lines for 3 different marks (BORIS, H3K27ac, SMC1) were generated by next generation sequencing, in duplicate, using Illumina NextSeq 500, for a total of 16 individual samples.
|
| |
|
| Contributor(s) |
Dries R, Debruyne D, George R |
| Citation(s) |
31391581 |
| |
| Submission date |
Jun 02, 2018 |
| Last update date |
Aug 14, 2019 |
| Contact name |
Ruben Dries |
| E-mail(s) |
rubendries@gmail.com
|
| Organization name |
DFCI
|
| Department |
Computational Biology
|
| Lab |
Longwood Center
|
| Street address |
360 Longwood Ave
|
| City |
Boston |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (16)
|
|
| This SubSeries is part of SuperSeries: |
| GSE103084 |
TAE sensitive and resistant Kelly cells |
|
| Relations |
| BioProject |
PRJNA474339 |
| SRA |
SRP149618 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE115250_Ewings_TC32_BORIS.noNeg.sorted.bw |
260.2 Mb |
(ftp)(http) |
BW |
| GSE115250_Ewings_TC32_BORIS_vs_David_Ewings_TC32_INPUT_peaks.narrowPeak.gz |
345 b |
(ftp)(http) |
NARROWPEAK |
| GSE115250_Ewings_TC32_H3K27ac.noNeg.sorted.bw |
244.2 Mb |
(ftp)(http) |
BW |
| GSE115250_Ewings_TC32_H3K27ac_vs_David_Ewings_TC32_INPUT_peaks.broadPeak.gz |
956.2 Kb |
(ftp)(http) |
BROADPEAK |
| GSE115250_Ewings_TC32_SMC1.noNeg.sorted.bw |
251.0 Mb |
(ftp)(http) |
BW |
| GSE115250_Ewings_TC32_SMC1_vs_David_Ewings_TC32_INPUT_peaks.narrowPeak.gz |
899.2 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE115250_Ewings_TC71_BORIS.noNeg.sorted.bw |
253.9 Mb |
(ftp)(http) |
BW |
| GSE115250_Ewings_TC71_BORIS_vs_David_Ewings_TC71_INPUT_peaks.narrowPeak.gz |
14.7 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE115250_Ewings_TC71_H3K27ac.noNeg.sorted.bw |
236.5 Mb |
(ftp)(http) |
BW |
| GSE115250_Ewings_TC71_H3K27ac_vs_David_Ewings_TC71_INPUT_peaks.broadPeak.gz |
691.4 Kb |
(ftp)(http) |
BROADPEAK |
| GSE115250_Ewings_TC71_SMC1.noNeg.sorted.bw |
248.1 Mb |
(ftp)(http) |
BW |
| GSE115250_Ewings_TC71_SMC1_vs_David_Ewings_TC71_INPUT_peaks.narrowPeak.gz |
462.3 Kb |
(ftp)(http) |
NARROWPEAK |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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