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Series GSE114850 Query DataSets for GSE114850
Status Public on Jun 01, 2018
Title RNA expression following TMPRSS11B overexpression or depletion
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: We are analyzing differential gene expression in human bronchial epithelial cells with TMPRSS11B overexpression or control GFP, as well has human lung squamous cell cancer line HCC2814 with inducible knockdown of TMPRSS11B or control.
 
Overall design Examination of total RNA expression in 4 cell lines.
 
Contributor(s) Updegraff BL, Zhou X, Guo Y, Chen P, Yang C, Sudderth J, Rodriguez-Tirado C, Girard L, Minna JD, Mishra P, Deberardinis RJ, O'Donnell KA
Citation(s) 30463017
Submission date May 24, 2018
Last update date Mar 26, 2019
Contact name Barrett Logan Updegraff
E-mail(s) barrett.updegraff@utsouthwestern.edu
Organization name Univ. of Texas Southwestern Medical Center at Dallas
Department Molecular Biology
Lab Kathryn O'Donnell
Street address 5323 Harry Hines Blvd.
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (12)
GSM3151668 HBEC-shp53-GFP rep 1
GSM3151669 HBEC-shp53-GFP rep 2
GSM3151670 HBEC-shp53-GFP rep 3
Relations
BioProject PRJNA473063
SRA SRP148945

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE114850_bupdegra_gencode.v19_GENES_counts.all_comparisons.tab.gz 4.4 Mb (ftp)(http) TAB
GSE114850_gencode.v19_GENES_counts_EV-VS-shT11B.glmLRT.txt.gz 1.2 Mb (ftp)(http) TXT
GSE114850_gencode.v19_GENES_counts_GFP-VS-TMPRSS11B.glmLRT.txt.gz 1.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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