|
| Status |
Public on Dec 15, 2018 |
| Title |
RNASeq analysis of calcification stages (and KPT) in pAVICs |
| Organism |
Sus scrofa |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
In order to assess transcriptome profile of different calcification stages and KPT, RNA-Seq analysis was performed
|
| |
|
| Overall design |
Three biological replicates were used for every condition
|
| |
|
| Contributor(s) |
Dutta P, Kodigepalli M, LaHaye S, Thompson WJ, Rains S, Nagel C, Thatcher K, Hinton R, Lincoln J |
| Citation(s) |
33601919 |
| |
| Submission date |
May 21, 2018 |
| Last update date |
Mar 02, 2021 |
| Contact name |
Punashi Dutta |
| Organization name |
Medical College of Wisconsin
|
| Department |
Cardiovascular
|
| Street address |
8701 Watertown Plank Road
|
| City |
Milwaukee |
| State/province |
WI |
| ZIP/Postal code |
53226 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19176 |
Illumina HiSeq 2500 (Sus scrofa) |
|
| Samples (12)
|
| GSM3148644 |
pAVICs Stage 2 biological replicate 1 |
| GSM3148645 |
pAVICs Stage 2 biological replicate 2 |
| GSM3148646 |
pAVICs Stage 2 biological replicate 3 |
| GSM3148647 |
pAVICs Stage 3+DMSO biological replicate 1 |
| GSM3148648 |
pAVICs Stage 3+DMSO biological replicate 2 |
| GSM3148649 |
pAVICs Stage 3+DMSO biological replicate 3 |
| GSM3148650 |
pAVICs Stage 3+KPT biological replicate 1 |
| GSM3148651 |
pAVICs Stage 3+KPT biological replicate 2 |
| GSM3148652 |
pAVICs Stage 3+KPT biological replicate 3 |
|
| Relations |
| BioProject |
PRJNA472382 |
| SRA |
SRP148596 |
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