|
| Status |
Public on Jun 16, 2019 |
| Title |
Genome-wide expression from the esophageal biopsies of subjects with and without eosinophilic esophagitis |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Esophageal biopsy RNA was isolated from distal esophageal biopsy RNA from EoE patients with active disease and from unaffected controls. EoE biopsies showed active disease pathology at the time when they were taken, and all patients reported no glucocorticoid treatment at the time of biopsy. RNA sequencing acquiring 50 million mappable 125 base-pair reads from paired-end libraries was performed at the Genetic Variation and Gene Discovery Core Facility at Cincinnati Children's Hospital Medical Center. Data were aligned to the hg19 build of the human genome using the Ensembl annotations as a guide for TopHat.
|
| |
|
| Overall design |
RNA sequencing of esophageal biopsy RNA
|
| |
|
| Contributor(s) |
Kottyan LC |
| Citation(s) |
30578870 |
| |
| Submission date |
Apr 18, 2018 |
| Last update date |
Jun 16, 2019 |
| Contact name |
Leah Kottyan |
| E-mail(s) |
leah.kottyan@cchmc.org
|
| Phone |
5134303354
|
| Organization name |
Cincinnati Children's Hospital Medical Center
|
| Lab |
Kottyan Lab
|
| Street address |
3333 Burnet Ave
|
| City |
Cin |
| State/province |
OH |
| ZIP/Postal code |
45229 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (20)
|
|
| Relations |
| BioProject |
PRJNA450845 |
| SRA |
SRP140945 |
Less...
More...