|
| Status |
Public on Mar 26, 2019 |
| Title |
Nascent RNA sequencing in IMR-32 cells treated with THZ531 or DMSO |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We performed RNA-seq analsysis of nascent transcripts obtained by 4sU labeling in IMR-32 cells treated with THZ531 for 30min and 2h and DMSO as a control
|
| |
|
| Overall design |
Expression of nascent transcripts in IMR-32 treated with THZ531 using standard RNA-seq library kit in triplicate, for a total of 9 individual samples
|
| |
|
| Contributor(s) |
Dries R, Krajewska M, George RE |
| Citation(s) |
30988284 |
| |
| Submission date |
Apr 18, 2018 |
| Last update date |
Apr 19, 2019 |
| Contact name |
Ruben Dries |
| E-mail(s) |
rubendries@gmail.com
|
| Organization name |
DFCI
|
| Department |
Computational Biology
|
| Lab |
Longwood Center
|
| Street address |
360 Longwood Ave
|
| City |
Boston |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (9)
|
|
| This SubSeries is part of SuperSeries: |
| GSE113314 |
Gene expression profiling in neuroblastoma cell lines treated with THZ531 or DMSO |
|
| Relations |
| BioProject |
PRJNA450798 |
| SRA |
SRP140871 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE113313_IMR_DMSO_1_forwardCov.bw |
25.7 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_DMSO_1_reverseCov.bw |
24.5 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_DMSO_2_forwardCov.bw |
26.6 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_DMSO_2_reverseCov.bw |
25.4 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_DMSO_3_forwardCov.bw |
28.2 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_DMSO_3_reverseCov.bw |
26.6 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_DMSO_forwardCov.bw |
35.9 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_DMSO_reverseCov.bw |
34.3 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_2h_1_forwardCov.bw |
23.2 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_2h_1_reverseCov.bw |
22.0 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_2h_2_forwardCov.bw |
22.6 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_2h_2_reverseCov.bw |
21.4 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_2h_3_forwardCov.bw |
23.9 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_2h_3_reverseCov.bw |
22.7 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_2h_forwardCov.bw |
32.2 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_2h_reverseCov.bw |
30.7 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_30min_1_forwardCov.bw |
22.2 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_30min_1_reverseCov.bw |
21.0 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_30min_2_forwardCov.bw |
21.9 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_30min_2_reverseCov.bw |
20.7 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_30min_3_forwardCov.bw |
20.4 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_30min_3_reverseCov.bw |
19.3 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_30min_forwardCov.bw |
29.4 Mb |
(ftp)(http) |
BW |
| GSE113313_IMR_THZ_30min_reverseCov.bw |
28.1 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
Less...
More...