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Series GSE113151 Query DataSets for GSE113151
Status Public on Apr 16, 2018
Title LH3 overexpression reverses profound alterations of gene transcriptional profile in cerebral vessels in hypertension-induced spontaneous intracerebral hemorrhage
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To gain mechanistic insights into the protection effects of lysyl hydroxylase (LH3) on reducing the susceptibility to intracerebral hemorrhage(ICH), a whole transcriptomic analysis of cerebral vessels were performed using RNA-seq. It is noteworthy that our preliminary data demonstrated that mice did not developed ICH until day 7 after AngII plus L-NAME infusion, cerebral vessels for RNA-seq were acquired at day 5 in order to provide the mechanistic or causal evidence of a direct participatory role of LH3 to the protection effects of ICH.
 
Overall design 15 samples. There are 3 groups: GFP-Veh group, mice were stereotactic injection of AAV-GFP and treated with saline. GFP-AL group, mice were stereotactic injection of AAV-GFP and treated with AngII plus L-NAME. LH3-AL group, mice were stereotactic injection of AAV-LH3 and treated with AngII plus L-NAME. Mice of each group were transcardially perfused with ice-cold phosphate-buffered saline, brain were collected and cerebral vessels were isolated.
 
Contributor(s) Li H, Xu H
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 15, 2018
Last update date Mar 21, 2019
Contact name li Michael
E-mail(s) lizz007sci@126.com
Organization name Basepedia
Street address beiqing road
City beijing
ZIP/Postal code 102206
Country China
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (15)
GSM3098120 GFP-Veh-1
GSM3098121 GFP-Veh-2
GSM3098122 GFP-Veh-3
Relations
BioProject PRJNA450267
SRA SRP140161

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113151_DEGs_of_GFP-AL_vs_GFP-Veh.txt.gz 59.7 Kb (ftp)(http) TXT
GSE113151_DEGs_of_LH3-AL_vs_GFP-Veh.txt.gz 58.7 Kb (ftp)(http) TXT
GSE113151_final.data.trans.FPKM.txt.gz 2.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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