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| Status |
Public on Apr 25, 2019 |
| Title |
Comparative Transcriptomic Analysis of Dermal Wound Healing Reveals De Novo Skeletal Muscle Regeneration in Acomys cahirinus |
| Organisms |
Acomys cahirinus; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This project is a comprehensive analysis of gene expression following full-thickness excisional dermal wounds in the African spiny mouse and the laboratory mouse.
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| Overall design |
8mm excisional wounds were made on the dorsal skin. Wounds were harvested on day 7 and 14 after wounding. Normal, unwounded (day 0) skin was used as a control. N=4 for each time point for each species. 2x150 bp paired-end reads. DSN library was equal amounts of all Acomys samples, pooled, and normalized using duplex-specific nuclease.
The 'Mus_Day-0_rep3' sample was removed from downstream analysis due to poor QC results, and is not included here.
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| Contributor(s) |
Brant J, Boatwright JL |
| Citation missing |
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| |
| Submission date |
Apr 12, 2018 |
| Last update date |
Apr 25, 2019 |
| Contact name |
Jason Orr Brant |
| E-mail(s) |
jobrant@ufl.edu
|
| Organization name |
University of Florida
|
| Department |
Biology
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| Lab |
Maden
|
| Street address |
2033 Mowry Rd
|
| City |
Gainesville |
| State/province |
FL |
| ZIP/Postal code |
32610 |
| Country |
USA |
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| Platforms (2) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL24885 |
Illumina NextSeq 500 (Acomys cahirinus) |
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| Samples (24)
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| Relations |
| BioProject |
PRJNA449937 |
| SRA |
SRP139827 |
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