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Series GSE113081 Query DataSets for GSE113081
Status Public on Apr 25, 2019
Title Comparative Transcriptomic Analysis of Dermal Wound Healing Reveals De Novo Skeletal Muscle Regeneration in Acomys cahirinus
Organisms Acomys cahirinus; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This project is a comprehensive analysis of gene expression following full-thickness excisional dermal wounds in the African spiny mouse and the laboratory mouse.
Overall design 8mm excisional wounds were made on the dorsal skin. Wounds were harvested on day 7 and 14 after wounding. Normal, unwounded (day 0) skin was used as a control. N=4 for each time point for each species. 2x150 bp paired-end reads. DSN library was equal amounts of all Acomys samples, pooled, and normalized using duplex-specific nuclease.
The 'Mus_Day-0_rep3' sample was removed from downstream analysis due to poor QC results, and is not included here.
Contributor(s) Brant J, Boatwright JL
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Submission date Apr 12, 2018
Last update date Apr 25, 2019
Contact name Jason Orr Brant
Organization name University of Florida
Department Biology
Lab Maden
Street address 2033 Mowry Rd
City Gainesville
State/province FL
ZIP/Postal code 32610
Country USA
Platforms (2)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL24885 Illumina NextSeq 500 (Acomys cahirinus)
Samples (24)
GSM3096105 Mus_Day-0_rep1
GSM3096106 Mus_Day-0_rep2
GSM3096107 Mus_Day-0_rep4
BioProject PRJNA449937
SRA SRP139827

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113081_Trinity.fasta.gz 107.5 Mb (ftp)(http) FASTA
GSE113081_aco_per_se_genes_counts_matrix.txt.gz 1.9 Mb (ftp)(http) TXT
GSE113081_aco_vs_mus_genes_counts_matrix.txt.gz 557.4 Kb (ftp)(http) TXT
GSE113081_acomys_annotation.txt.gz 21.1 Mb (ftp)(http) TXT
GSE113081_mus_per_se_genes_counts_matrix.txt.gz 556.9 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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