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Series GSE113071 Query DataSets for GSE113071
Status Public on Apr 13, 2018
Title Sequencing of human chain specific ribosome transcriptional group
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary The purpose of this study is to investigate whether the expression profile of long chain non coding RNA (lncRNA) in different concentrations of PM2.5 after treatment of normal human bronchial cells is changed. The total RNAs were extracted from 16HBE cells after exposure to either PM2.5, at concentration of 50 μg/mL and 100μg/mL, or PBS (control group) for 48h. lncRNA-sequencing, detection and analysis was performed. Fold change ≥ 2 and p ≤ 0.05 were used as a cutoff values to determine significant differential expression Further, cluster analyses were performed to classify lncRNAs based on their distinguishable expression in different samples.
Overall design Detection of a long chain noncoding RNA treated with cell type and different concentrations of PM2.5
Contributor(s) Tan Y, Wang Y, peng X
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Submission date Apr 12, 2018
Last update date Dec 23, 2018
Contact name Tan yi
Organization name South China Institute of Environmental Science (SCIES), Ministry of Environmental Protection (MEP)
Street address No.7 West Street, Yuancun, Guangzhou, P. R. China
City Guangzhou
ZIP/Postal code 510000
Country China
Platforms (1)
GPL21290 Illumina HiSeq 3000 (Homo sapiens)
Samples (3)
GSM3095735 A1-0
GSM3095736 A1-50
GSM3095737 A1-100
BioProject PRJNA449927
SRA SRP139810

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Supplementary file Size Download File type/resource
GSE113071_gene_exp.txt.gz 2.0 Mb (ftp)(http) TXT
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