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| Status |
Public on Oct 29, 2018 |
| Title |
The subiculum is a patchwork of discrete subregions |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Subiculum pyramidal cells constitute a prominent output neuron class of the hippocampus. Here, we examined diversity in this cell type using single-cell RNA-seq.
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| Overall design |
Examination of subiculum pyramidal cell transcriptomes.
Please note that there are total 28 samples from scRNA-seq, representing Read 1 and Read 2 of 14 datasets. The metadata.txt (with 1344 rows) contains the information on each well (96 well plate) for the 14 datasets (1344 = 96 X 14).
For the combinedTables.txt, the analysis only retained wells that were not control wells (e.g., not empty, not spike-in as annotated in metadata.txt as such), resulted in 1190 cells (included in the further analysis after removing these wells). The column headers/names represent the original dataset they emerged from.
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| Contributor(s) |
Cembrowski M, Spruston N |
| Citation(s) |
30375971 |
| |
| Submission date |
Apr 12, 2018 |
| Last update date |
Mar 21, 2019 |
| Contact name |
Mark Steven Cembrowski |
| Organization name |
University of British Columbia
|
| Department |
Cellular and Physiological Sciences
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| Lab |
Cembrowski
|
| Street address |
2350 Health Sciences Mall
|
| City |
Vancouver |
| State/province |
BC |
| ZIP/Postal code |
V6S0B7 |
| Country |
Canada |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (28)
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| Relations |
| BioProject |
PRJNA449925 |
| SRA |
SRP139807 |
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