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| Status |
Public on Dec 10, 2018 |
| Title |
RNA sequencing of HepG2 cells treated with estradiol or estrogen receptor agonist |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We report differential expressed genes in HepG2 cells treated with control, E2, or an ER agonist
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| Overall design |
Methods: HepG2 cells treated with control, E2, PPT, or DPN for 48 hours. mRNA profiles were generated by deep sequencing, in triplicates, using Illumina NextSeq2000 sequencing system. The sequence reads that passed quality filters were analyzed at the transcript level with DESeq2.
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| Contributor(s) |
Shen M, Cao J, Shi H |
| Citation(s) |
30510575, 33672651 |
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| Submission date |
Apr 11, 2018 |
| Last update date |
Mar 11, 2021 |
| Contact name |
Haifei Shi |
| E-mail(s) |
shih@miamioh.edu
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| Phone |
5135293162
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| Organization name |
Miami University
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| Department |
Biology
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| Street address |
700 E High Street
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| City |
Oxford |
| State/province |
OH |
| ZIP/Postal code |
45056 |
| Country |
USA |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA449680 |
| SRA |
SRP139556 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE112983_RAW.tar |
3.0 Mb |
(http)(custom) |
TAR (of XLSX) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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