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Series GSE112445 Query DataSets for GSE112445
Status Public on Mar 19, 2019
Title Gene expression profile in breast cancer cells
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report the gene expression patterns in MDA-MB-231 (a line selected for low metastatic ability), MDA-MB-231-1833 (its bone-tropic metastatic derivative line), MDA-MB-231p27CK-DD (a phosphomimetic cell line), MDA-MB-231-1833shp27 (p27 knockdown cell line), MDA-MB-231-1833PF1502 (PI3K inhibitor treatment). It shows that the gene expression pattern are regulated in a p27 phosphorylation-dependent manner.
 
Overall design Examination in 5 cell types.
 
Contributor(s) Yoon H, Slingerland JM
Citation(s) 30877256, 38886396
Submission date Mar 28, 2018
Last update date Jul 01, 2024
Contact name Joyce Marie Slingerland
E-mail(s) jslingerland@med.miami.edu
Phone 305-243-6788
Organization name University of Miami
Street address 1501 NW 10th Avenue
City Miami
ZIP/Postal code 33136
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (15)
GSM3070232 MDA-MB-231_rep1_RNA-seq
GSM3070233 MDA-MB-231_rep2_RNA-seq
GSM3070234 MDA-MB-231_rep3_RNA-seq
This SubSeries is part of SuperSeries:
GSE112446 Genome-wide profile of cJun and p27 and gene expression profile in breast cancer cells
Relations
BioProject PRJNA447896
SRA SRP136720

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE112445_RNAseqAllTable-count.txt.gz 640.0 Kb (ftp)(http) TXT
GSE112445_RNAseqAllTable-rpkm.txt.gz 2.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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