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Series GSE111877 Query DataSets for GSE111877
Status Public on Nov 30, 2018
Title The role of the bHLH factor E47 in modulating hepatic glucocorticoid receptor action (metabolism) [RNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed RNA sequencing in different wildtype and E47ko tissues in response to treatment with glucocorticoids. We show a global deregulation of gene expression programs involved in lipid, triglyceride and cholesterol metabolism & transport for E47 mutant liver tissue.
 
Overall design mRNA profiles of different wildtype and E47ko tissues in response to long-term and short-term treatment with glucocorticoids (Dex, Cort).
 
Contributor(s) Hemmer MC, Greulich F, Uhlenhaut NH
Citation(s) 30659202
Submission date Mar 15, 2018
Last update date Mar 21, 2019
Contact name Henriette Uhlenhaut
E-mail(s) henriette.uhlenhaut@helmholtz-muenchen.de
Phone +49 89 3187 2052
Organization name Helmholtz
Department HDC
Lab IDO
Street address Ingolstaedter Landstr 1
City Neuherberg
State/province Munich
ZIP/Postal code 85764
Country Germany
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (39)
GSM3043214 E47KO_liver_3weeksDex_rep1 [GAR0179]
GSM3043215 E47KO_liver_3weeksDex_rep2 [GAR0181]
GSM3043216 wildtype_liver_3weeksDex_rep1 [GAR0182]
Relations
BioProject PRJNA438469
SRA SRP135768

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111877_2018-3_liver_E47Kovswt_longTermCort_unfiltered.txt.gz 1.5 Mb (ftp)(http) TXT
GSE111877_2018-3_liver_E47Kovswt_shorttermDex_unfiltered.txt.gz 1.1 Mb (ftp)(http) TXT
GSE111877_2018-3_liver_E47Kovswt_untreated_unfiltered.txt.gz 1.7 Mb (ftp)(http) TXT
GSE111877_2018_3_WAT_E47Kovswt_Dex_DE_unfiltered.txt.gz 1.3 Mb (ftp)(http) TXT
GSE111877_RAW.tar 8.4 Mb (http)(custom) TAR (of TAB, TXT)
GSE111877_liver_totalE47KOvsWt_Dex_unfiltered.txt.gz 1000.8 Kb (ftp)(http) TXT
GSE111877_skeletalMuscle_E47Kovswt_Dex_DE_unfiltered.txt.gz 1.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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