|
| Status |
Public on Aug 05, 2018 |
| Title |
Global transcriptome analysis of HAP1 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We analyzed the global change in transcription upon CHD3-KO and SENP1-KO compared to control HAP1 cells.
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| |
|
| Overall design |
CRISPR-Cas9-generated knockout HAP1 cells for CHD3 and SENP1 compared to HAP1 control cell line were profiled for changes in transcriptome-wide expression using RNA-seq. Three biological replicates were used for RNA sequencing, where 150 bp PE-reads were obtained using Illumina Hiseq 4000 sequencer
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| |
|
| Contributor(s) |
Gabrielsen OS, Lemma RB |
| Citation(s) |
30082317 |
| |
| Submission date |
Feb 28, 2018 |
| Last update date |
Apr 18, 2019 |
| Contact name |
Roza Berhanu Lemma |
| E-mail(s) |
r.b.lemma@ibv.uio.no
|
| Phone |
+4740975997
|
| Organization name |
University of Oslo
|
| Department |
Department of Biosciences
|
| Lab |
Odd Stokke Gabrielsen
|
| Street address |
Blindernveien 31
|
| City |
Oslo |
| ZIP/Postal code |
0371 |
| Country |
Norway |
| |
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| Platforms (1) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
|
| Samples (9)
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|
| Relations |
| BioProject |
PRJNA436386 |
| SRA |
SRP133685 |
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