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Status |
Public on Nov 23, 2018 |
Title |
Impact of intron deletion on starvation dependent repression of gene expression |
Organism |
Saccharomyces cerevisiae |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
Deleting the introns from either the chromatin remodeling MMS2 gene or the splicing regulator gene YSF3 modified the expression of a common set of genes in the stationary phase of growth.
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Overall design |
RNA extracted from wild type cells and cells carrying deletion in the intron of two genes with unrelated function was sequenced and their expression pattern compared in different phases of growth.
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Contributor(s) |
Abou Elela S |
Citation(s) |
30651641 |
|
Submission date |
Feb 23, 2018 |
Last update date |
Mar 11, 2019 |
Contact name |
Sherif Abou Elela |
E-mail(s) |
sherif.abou.elela@usherbrooke.ca
|
Organization name |
Université de Sherbrooke
|
Department |
Microbiologie et Infectiologie
|
Street address |
3201, rue Jean-Mignault
|
City |
Sherbrooke |
State/province |
Québec |
ZIP/Postal code |
J1E 4K8 |
Country |
Canada |
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Platforms (1) |
GPL17342 |
Illumina HiSeq 2500 (Saccharomyces cerevisiae) |
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Samples (12)
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|
Relations |
BioProject |
PRJNA435723 |
SRA |
SRP133381 |
Supplementary file |
Size |
Download |
File type/resource |
GSE111056_72-74_log_LOG2FC_padj0_001.csv.gz |
110 b |
(ftp)(http) |
CSV |
GSE111056_72_74-48h_LOG2FC_padj0_001.csv.gz |
561 b |
(ftp)(http) |
CSV |
GSE111056_72_log-48h_LOG2FC_padj0_001.csv.gz |
148.9 Kb |
(ftp)(http) |
CSV |
GSE111056_74_log-48h_LOG2FC_padj0_001.csv.gz |
144.8 Kb |
(ftp)(http) |
CSV |
GSE111056_WT-72_48h_LOG2FC_padj0_001.csv.gz |
10.3 Kb |
(ftp)(http) |
CSV |
GSE111056_WT-72_log_LOG2FC_padj0_001.csv.gz |
30.7 Kb |
(ftp)(http) |
CSV |
GSE111056_WT-74_48h_LOG2FC_padj0_001.csv.gz |
13.0 Kb |
(ftp)(http) |
CSV |
GSE111056_WT-74_log_LOG2FC_padj0_001.csv.gz |
17.6 Kb |
(ftp)(http) |
CSV |
GSE111056_WT_log-48h_LOG2FC_padj0_001.csv.gz |
158.3 Kb |
(ftp)(http) |
CSV |
GSE111056_merged_fpkm_matrix.csv.gz |
457.2 Kb |
(ftp)(http) |
CSV |
GSE111056_merged_raw_count_matrix.csv.gz |
161.1 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |