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Series GSE111056 Query DataSets for GSE111056
Status Public on Nov 23, 2018
Title Impact of intron deletion on starvation dependent repression of gene expression
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Summary Deleting the introns from either the chromatin remodeling MMS2 gene or the splicing regulator gene YSF3 modified the expression of a common set of genes in the stationary phase of growth.
 
Overall design RNA extracted from wild type cells and cells carrying deletion in the intron of two genes with unrelated function was sequenced and their expression pattern compared in different phases of growth.
 
Contributor(s) Abou Elela S
Citation(s) 30651641
Submission date Feb 23, 2018
Last update date Mar 11, 2019
Contact name Sherif Abou Elela
E-mail(s) sherif.abou.elela@usherbrooke.ca
Organization name Université de Sherbrooke
Department Microbiologie et Infectiologie
Street address 3201, rue Jean-Mignault
City Sherbrooke
State/province Québec
ZIP/Postal code J1E 4K8
Country Canada
 
Platforms (1)
GPL17342 Illumina HiSeq 2500 (Saccharomyces cerevisiae)
Samples (12)
GSM3021114 WT_10H2 log
GSM3021115 WT_10H3 log
GSM3021116 WT_10H2 48h
Relations
BioProject PRJNA435723
SRA SRP133381

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111056_72-74_log_LOG2FC_padj0_001.csv.gz 110 b (ftp)(http) CSV
GSE111056_72_74-48h_LOG2FC_padj0_001.csv.gz 561 b (ftp)(http) CSV
GSE111056_72_log-48h_LOG2FC_padj0_001.csv.gz 148.9 Kb (ftp)(http) CSV
GSE111056_74_log-48h_LOG2FC_padj0_001.csv.gz 144.8 Kb (ftp)(http) CSV
GSE111056_WT-72_48h_LOG2FC_padj0_001.csv.gz 10.3 Kb (ftp)(http) CSV
GSE111056_WT-72_log_LOG2FC_padj0_001.csv.gz 30.7 Kb (ftp)(http) CSV
GSE111056_WT-74_48h_LOG2FC_padj0_001.csv.gz 13.0 Kb (ftp)(http) CSV
GSE111056_WT-74_log_LOG2FC_padj0_001.csv.gz 17.6 Kb (ftp)(http) CSV
GSE111056_WT_log-48h_LOG2FC_padj0_001.csv.gz 158.3 Kb (ftp)(http) CSV
GSE111056_merged_fpkm_matrix.csv.gz 457.2 Kb (ftp)(http) CSV
GSE111056_merged_raw_count_matrix.csv.gz 161.1 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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