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GEO accession:
Series GSE110901
Query DataSets for GSE110901
Status
Public on May 21, 2019
Title
Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31222014
Submission date
Feb 20, 2018
Last update date
Aug 06, 2019
Contact name
Mark Dawson
E-mail(s)
mark.dawson@petermac.org
Organization name
Peter MacCallum Cancer Centre
Street address
305 Grattan Street
City
Melbourne
State/province
VIC
ZIP/Postal code
3000
Country
Australia
Platforms (1)
GPL19057
Illumina NextSeq 500 (Mus musculus)
Samples (86)
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GSM3018455
Pooled single cell RNA-Seq
GSM3018456
CRISPR pool
GSM3018457
BRD4_SenDMSO_ChIP-seq
GSM3018458
BRD4_ResIBET_ChIP-seq
GSM3018459
BRD4_ResLSD1i_ChIP-seq
GSM3018460
BRD4_ResLSD1i_IBET_ChIP-seq
GSM3018461
H3K27ac_SenDMSO_ChIP-seq
GSM3018462
H3K27ac_ResIBET_ChIP-seq
GSM3018463
H3K27ac_ResLSD1i_ChIP-seq
GSM3018464
H3K4me1_SenDMSO_ChIP-seq
GSM3018465
H3K4me1_ResIBET_ChIP-seq
GSM3018466
H3K4me1_ResLSD1i_ChIP-seq
GSM3018467
H3K4me2_SenDMSO_ChIP-seq
GSM3018468
H3K4me2_ResIBET_ChIP-seq
GSM3018469
H3K4me2_ResLSD1i_ChIP-seq
GSM3018470
PUI1_SenDMSO_ChIP-seq
GSM3018471
PUI1_ResIBET_ChIP-seq
GSM3018472
PUI1_ResLSD1i_ChIP-seq
GSM3018473
MED1_SenDMSO_ChIP-seq
GSM3018474
MED1_ResIBET_ChIP-seq
GSM3018475
MED1_ResLSD1_ChIP-seq
GSM3018476
InputSensitive_for_ChIP-seq
GSM3018477
InputResistant_for_ChIP-seq
GSM3018478
Resistant IBET Click-seq
GSM3018479
Resistant LSD1i Click-seq
GSM3018480
Sensitive DMSO Click-seq
GSM3018481
Resistant Input for Click-seq
GSM3018482
Sensitive Input for Click-seq
GSM3018483
H3K27ac HiChIP Resistant
GSM3018484
H3K27ac HiChIP Resistant LSD1i
GSM3018485
Sensitive Rep 1 RNA-seq
GSM3018486
Sensitive IBET Rep 1 RNA-seq
GSM3018487
Resistant Rep 1 RNA-seq
GSM3018488
Resistant LSD1i Rep 1 RNA-seq
GSM3018489
Resistant LSD1i IBET Rep 1 RNA-seq
GSM3018490
Sensitive Rep 2 RNA-seq
GSM3018491
Sensitive IBET Rep 2 RNA-seq
GSM3018492
Resistant Rep 2 RNA-seq
GSM3018493
Resistant LSD1i Rep 2 RNA-seq
GSM3018494
Resistant LSD1i IBET Rep 2 RNA-seq
GSM3018495
Sensitive Rep 3 RNA-seq
GSM3018496
Sensitive IBET Rep 3 RNA-seq
GSM3018497
Resistant Rep 3 RNA-seq
GSM3018498
Resistant LSD1i Rep 3 RNA-seq
GSM3018499
Resistant LSD1i IBET Rep 3 RNA-seq
GSM3018500
Resistant DMSO Rep 1 RNA-seq
GSM3018501
Resistant DMSO Rep 2 RNA-seq
GSM3018502
Resistant DMSO Rep 3 RNA-seq
GSM3018503
Resistant DMSO IBET Rep 1 RNA-seq
GSM3018504
Resistant DMSO IBET Rep 2 RNA-seq
GSM3018505
Resistant DMSO IBET Rep 3 RNA-seq
GSM3018506
Resistant IBET_ATAC
GSM3018507
Resistant LSD1i_ATAC
GSM3018508
Sensitive DMSO_ATAC
GSM3018509
Pu1-shRNA1 DMSO_ATAC
GSM3018510
Pu1-shRNA1 LSD1i_ATAC
GSM3018511
Pu1-shRNA2 DMSO_ATAC
GSM3018512
Pu1-shRNA2 LSD1i_ATAC
GSM3018513
Scramble-shRNA DMSO_ATAC
GSM3018514
Scramble-shRNA LSD1i_ATAC
GSM3486869
H3K27ac_Pu-1_shRNA1_DMSO
GSM3486870
H3K27ac_Pu-1_shRNA1_LSD1i
GSM3486871
H3K27ac_Pu-1_shRNA2_DMSO
GSM3486872
H3K27ac_Pu-1_shRNA2_LSD1i
GSM3486873
H3K27ac_Scrambled_DMSO
GSM3486874
H3K27ac_Scrambled_LSD1i
GSM3486875
H3K4me2_Pu-1_shRNA1_DMSO
GSM3486876
H3K4me2_Pu-1_shRNA1_LSD1i
GSM3486877
H3K4me2_Pu-1_shRNA2_DMSO
GSM3486878
H3K4me2_Pu-1_shRNA2_LSDi
GSM3486879
H3K4me2_Scrambled_DMSO
GSM3486880
H3K4me2_Scrambled_LSD1i
GSM3486881
LSD1_Res
GSM3486882
LSD1_Res_stLSD1i
GSM3486883
Irf8_ResIBET
GSM3486884
Irf8_ResLSD1i
GSM3486885
Pu-1_Scrambled_ResLSD1i
GSM3486886
Pu-1_Irf8_shRNA1_ResLSD1i
GSM3486887
Irf8_Empty_ResIBET
GSM3486888
Irf8_OverExpression_ResLSD1i
GSM3486893
MLL-AF9_400nM IBET_scRNA-seq
GSM3486894
MLL-AF9_600nM IBET_scRNA-seq
GSM3486895
MLL-AF9_800nM IBET_scRNA-seq
GSM3486896
MLL-AF9_1000nM IBET_scRNA-seq
GSM3486897
MLL-AF9_1000nM IBET_9wks_scRNA-seq
GSM3486898
MLL-AF9_DMSO_9wks_scRNA-seq
This SuperSeries is composed of the following SubSeries:
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GSE110894
Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia [single cell RNA-seq]
GSE110895
Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia [CRISPR screen]
GSE110896
Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia [ChIP-seq]
GSE110897
Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia [Click-seq]
GSE110898
Enhancer remodeling overcomes therapeutic resistance driven by epigenetic evolution in cancer [HiChIP]
GSE110899
Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia [RNA-seq]
GSE110900
Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia [ATAC-seq]
GSE122843
Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia [single cell RNA-seq adaptation]
Relations
BioProject
PRJNA434750
Download family
Format
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TXT
Supplementary file
Size
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File type/resource
GSE110901_RAW.tar
7.8 Gb
(http)
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TAR (of HIC, NARROWPEAK)
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