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Series GSE110828 Query DataSets for GSE110828
Status Public on Feb 09, 2021
Title Integrative analysis of DNA methylation and gene expression data among preterm and/or small for gestational age infants during perinatal period [methylation]
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Preterm or small for gestational age (SGA) infants are to be at high risk of noncommunicable diseases in adolescence, because they are exposed to hypoxia and malnutrition in and ex utero during perinatal period. Epigenetics could be one of the most important mechanisms of DOHaD.In the field of premature babies, previous studies investigated the methylation alterations related to gestational age and birthweight by using cord blood samples.
In the field of preterm or SGA babies, there were few EWAS studies that examine whether methylation changes relate to RNA expression using cord blood samples, and the interpretation of postnatal blood methylation were different by studies.The objective is to investigate the epigenetic alterations associated with preterm birth and SGA by using methylation and expression microarray, and to explore the epigenetic changes which may persist after birth.
 
Overall design Cross-sectional study using 110 cord blood samples and 47 postnatal peripheral blood samples.
 
Contributor(s) Kashima K, Takahashi N, Nagamatsu T, Fujii T, Omori I, Shimizu M, Hyodo H, Kamura H, Kawai T, Nakabayashi K, Hata K, Kugu K
Citation(s) 33564054
Submission date Feb 20, 2018
Last update date Feb 16, 2021
Contact name Kohei Kashima
E-mail(s) KASHIMAK-PED@h.u-tokyo.ac.jp
Phone +81-3-5800-8659
Organization name The University of Tokyo Hospital
Department Pediatrics
Street address 7-3-1 Hongo Bunkyo-ku
City Tokyo
ZIP/Postal code 1138655
Country Japan
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (157)
GSM3017301 Cord Blood_TD001 [methylation]
GSM3017302 Cord Blood_TD002 [methylation]
GSM3017303 Cord Blood_TD003 [methylation]
This SubSeries is part of SuperSeries:
GSE110829 Integrative analysis of DNA methylation and gene expression data among preterm and/or small for gestational age infants during perinatal period
Relations
BioProject PRJNA434675

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE110828_RAW.tar 183.1 Mb (http)(custom) TAR
GSE110828_non-normalized.txt.gz 335.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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