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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 28, 2018 |
| Title |
Gene-specific mechanisms dictate glucocorticoid receptor-mediated repression of inflammatory response genes in macrophages |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
29424686 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 DK099087 |
Glucocorticoid-regulated transcription networks in macrophage biology |
HOSPITAL FOR SPECIAL SURGERY |
INEZ ROGATSKY |
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| Submission date |
Feb 07, 2018 |
| Last update date |
Mar 21, 2019 |
| Contact name |
Yurii Chinenov |
| Organization name |
Hospital for special surgery
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| Department |
Research Division
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| Lab |
HSS Genomics Center
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| Street address |
535 E 71 str, Hospital for Special Surgery
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| City |
New york |
| State/province |
New York |
| ZIP/Postal code |
11361 |
| Country |
USA |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (49)
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| GSM2932662 |
04_BRD4_LD_rep2 |
| GSM2932663 |
05_BRD4_U_rep1 |
| GSM2932664 |
06_BRD4_U_rep2 |
| GSM2932665 |
07_GR_D_rep1 |
| GSM2932666 |
08_GR_D_rep2 |
| GSM2932667 |
09_GR_L_rep1 |
| GSM2932668 |
10_GR_L_rep2 |
| GSM2932669 |
11_GR_LD_rep1 |
| GSM2932670 |
12_GR_LD_rep2 |
| GSM2932671 |
13_GR_U_rep1 |
| GSM2932672 |
14_GR_U_rep2 |
| GSM2932673 |
15_Nelf1_LPS0h |
| GSM2932674 |
16_Nelf1_LPS1h |
| GSM2932675 |
17_Nelf1_LPS3h |
| GSM2932676 |
18_Nelf3_LD_1h |
| GSM2932677 |
19_p65_L_rep1 |
| GSM2932678 |
20_p65_L_rep2 |
| GSM2932679 |
21_p65_LD_rep1 |
| GSM2932680 |
22_p65_LD_rep2 |
| GSM2932681 |
23_p65_U_rep1 |
| GSM2932682 |
24_p65_U_rep2 |
| GSM2932683 |
25_Pol2_L_Rep1 |
| GSM2932684 |
26_Pol2_L_Rep2 |
| GSM2932685 |
27_Pol2_LD_Rep1 |
| GSM2932686 |
28_Pol2_LD_Rep2 |
| GSM2932687 |
29_Pol2_U_Rep1 |
| GSM2932688 |
30_Pol2_U_Rep2 |
| GSM2932689 |
31_GR_Input |
| GSM2932690 |
32_p65_Input |
| GSM2932691 |
33_Pol2_Input |
| GSM2983145 |
WT,untreated control [WT_CO_74] |
| GSM2983146 |
WT,untreated control [WT_CO_34] |
| GSM2983147 |
NELF B KO,untreated control [KO_CO_58] |
| GSM2983148 |
NELF B KO,untreated control [KO_CO_26] |
| GSM2983149 |
WT, LPS, 1h [WT_L60_13] |
| GSM2983150 |
WT, LPS, 1h [WT_L60_77] |
| GSM2983151 |
WT, LPS, 1h [WT_L60_37] |
| GSM2983152 |
KO, LPS, 1h [KO_L60_.5] |
| GSM2983153 |
KO, LPS, 1h [KO_L60_61] |
| GSM2983154 |
KO, LPS, 1h [KO_L60_29] |
| GSM2983155 |
WT, LPS+Dex, 1h [WT_LD60_14] |
| GSM2983156 |
WT, LPS+Dex, 1h [WT_LD60_78] |
| GSM2983157 |
WT, LPS+Dex, 1h [WT_LD60_38] |
| GSM2983158 |
KO, LPS+Dex, 1h [KO_LD60_.6] |
| GSM2983159 |
KO, LPS+Dex, 1h [KO_LD60_62] |
| GSM2983160 |
KO, LPS+Dex, 1h [KO_LD60_30] |
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| This SuperSeries is composed of the following SubSeries: |
| GSE109131 |
Gene-specific mechanisms dictate glucocorticoid receptor-mediated repression of inflammatory response genes in macrophages [ChIP-seq] |
| GSE110243 |
Gene-specific mechanisms dictate glucocorticoid receptor-mediated repression of inflammatory response genes in macrophages [RNA-seq] |
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| Relations |
| BioProject |
PRJNA433364 |
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