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Series GSE110212 Query DataSets for GSE110212
Status Public on Mar 19, 2019
Title Obesity expands a distinct population of adipose-resident T cells and increases vulnerability to infection
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Obesity in humans is associated with worsened health outcomes following infections compared to non-obese individuals. Here, we examined the effects of adipose tissue and obesity on T cell responses to virus infection in mice. Lymphocytic choriomeningitis virus (LCMV) grew to high titer in adipose tissue. Virus-specific T cells enter the adipose tissue to resolve infection but then remain as a memory population distinct from memory T cells in lymphoid tissues. Memory CD4+ and CD8+ T cells residing in adipose were abundant, accounting for roughly 10% of all virus-specific memory T cells. Diet-induced obesity increased memory T cell number in adipose and spleen. Upon re-challenge infection, memory T cells caused severe pathogenesis, leading to sharply increased lipase levels, calcification of adipose tissue, pancreatitis, and reduced survival in obese mice but not lean mice. Thus, obesity leads to a unique form of viral pathogenesis involving memory T cell-dependent adipocyte destruction and collateral damage to other tissues.
 
Overall design RNA-seq comparison of CD4+ T cells in spleen vs fat (with 10 mice pooled per replicate) and CD8+ T cells in spleen vs fat (with 5 mice pooled per replicate)
 
Contributor(s) Ichiro M, Joshua S, Melinda B, Terry M, Jason W
Citation(s) 30970254
Submission date Feb 06, 2018
Last update date Jun 25, 2019
Contact name Joshua Starmer
Organization name University of North Carolina at Chapel Hill
Department Genetics
Lab Magnuson
Street address 120 Mason Farm Road
City Chapel Hill
State/province NORTH CAROLINA
ZIP/Postal code 27599-7264
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (8)
GSM2982741 CD4+ T Cells Pool1 Spleen
GSM2982742 CD4+ T Cells Pool2 Spleen
GSM2982743 CD4+ T Cells Pool1 Fat
Relations
BioProject PRJNA433181
SRA SRP132290

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Supplementary file Size Download File type/resource
GSE110212_cd4_and_cd8_counts_per_gene.txt.gz 266.3 Kb (ftp)(http) TXT
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Processed data are available on Series record

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