|
| Status |
Public on Feb 06, 2018 |
| Title |
A practical evaluation of alignment algorithms for RNA variant calling analysis |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We performed RNA-seq with ten pieces of breast cancer (invasive ductal carcinoma; luminal B type) tissue and three pieces of adjacent normal tissue from a single patient. These RNA-seq data were used to evaluate the performance of splice-aware aligners.
|
| |
|
| Overall design |
RNA-seq was performed with 10 pieces of breast cancer tissue and 3 pieces of adjacent normal tissue obtained from a single patient
|
| |
|
| Contributor(s) |
Kang K |
| Citation(s) |
30519573 |
| |
| Submission date |
Feb 05, 2018 |
| Last update date |
Mar 27, 2019 |
| Contact name |
Keunsoo Kang |
| E-mail(s) |
kangk1204@gmail.com
|
| Organization name |
Dankook University
|
| Street address |
119 Dandae-ro
|
| City |
Cheonan |
| ZIP/Postal code |
31119 |
| Country |
South Korea |
| |
|
| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
|
| Samples (13)
|
|
| Relations |
| BioProject |
PRJNA432903 |
| SRA |
SRP132172 |
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