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Series GSE109983 Query DataSets for GSE109983
Status Public on May 17, 2018
Title Bioactive compound from marine sponge-derived Streptomyces sp. SBT348 inhibits staphylococcal growth and biofilm formation
Organism Staphylococcus epidermidis RP62A
Experiment type Expression profiling by high throughput sequencing
Summary Staphylococcus epidermidis, the common inhabitant of human skin and mucosal surfaces has emerged as an important pathogen in patients receiving surgical implants and medical devices. Entering the body via surgical sites and colonizing the medical devices through formation of multi-layered biofilms it leads to refractory and persistent device-related infections (DRIs). Staphylococcal proportions within biofilms are more tolerant to antibiotics and immune responses, and thus are hard-to-treat. The consequent morbidity and mortality, and economic losses in health care systems has strongly necessitated the need for development of new anti-bacterial and anti-biofilm based therapeutics. In this study, we describe the biological activity of a marine sponge-derived Streptomyces sp. SBT348 extract in restraining staphylococcal growth and biofilm formation on polystyrene, glass, medically relevant titan metal and silicone surfaces. A bio-assay guided fractionation was performed to isolate the active compound (C3) from the crude SBT348 extract. Our results demonstrated that C3 effectively inhibits the growth (MIC: 31.25 µg/ml) and biofilm formation (sub-MIC range: 1.95-<31.25 µg/ml) of S. epidermidis RP62A in vitro. Chemical characterization of C3 by heat and enzyme treatments, and High-Resolution Fourier Transform Mass Spectrometry (HRMS) revealed its heat-stable and non-proteinaceous nature, and high molecular weight (1258. 3257 Da). Cytotoxicity profiling of C3 in vitro on mouse fibroblast (NIH/3T3) and macrophage (J774.1) cell lines, and in vivo on the greater wax moth larvae Galleria melonella revealed its non-toxic nature at the effective dose. Transcriptome analysis of C3 treated-S. epidermidis RP62A has further unmasked the negative effect of C3 on central metabolism (carbon, amino acid and protein, lipids, nucleotide and energy) suggesting its mode of action. Taken together, these findings suggest that C3 could be possibly used as antibacterial and antibiofilm coatings on medically-relevant surfaces and prevent the relapsing staphylococcal DRIs.
 
Overall design Examination of transcriptome of S. epidermidis RP62A treated with the bioactive compound C3 (62.5 µg/ml) at 20 min and 3 h time point
 
Contributor(s) Balasubramanian S, Oelschlaeger TA
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Submission date Feb 01, 2018
Last update date May 19, 2018
Contact name Richa Bharti
E-mail(s) richa.bharti@uni-wuerzburg.de
Organization name University of Wuerzburg
Department IMIB,Core Unit Systemmedizin
Street address Josef-Schneider-Straße 2 / Bau D15
City Würzburg
State/province Bavaria
ZIP/Postal code 97080
Country Germany
 
Platforms (1)
GPL24569 Illumina NextSeq 500 (Staphylococcus epidermidis RP62A)
Samples (12)
GSM2975572 C3_20min_Rep_1
GSM2975573 C3_20min_Rep_2
GSM2975574 C3_20min_Rep_3
Relations
BioProject PRJNA432515

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109983_RAW.tar 221.4 Mb (http)(custom) TAR (of WIG)
GSE109983_gene_wise_quantifications_combined.txt.gz 245.5 Kb (ftp)(http) TXT
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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