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Series GSE109922 Query DataSets for GSE109922
Status Public on Sep 01, 2018
Title Genetic and epigenetic evolution as a contributor to WT1-mutant leukemogenesis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Genetic studies have identified recurrent somatic mutations in Acute Myeloid Leukemia (AML) patients, including in WT1 (Wilms’ tumor gene 1). The molecular mechanisms by which WT1 mutations contribute to leukemogenesis have not yet been fully elucidated. We investigated the role of Wt1 gene dosage in steady state and pathologic hematopoiesis. Wt1 heterozygous loss enhanced stem cell self-renewal in an age-dependent manner, with increased stem cell function over time and age-dependent leukemic transformation. Wt1-haploinsufficient leukemias were characterized by progressive genetic and epigenetic alterations, including in known leukemia disease alleles, demonstrating a requirement for additional events to promote hematopoietic transformation. Consistent with this observation, we found that Wt1 haploinsufficiency cooperates with Flt3-ITD mutation to induce fully penetrant AML. Our studies provide insight into mechanisms of Wt1-loss in leukemogenesis and into the evolutionary events required to induce transformation of Wt1-haploinsufficient stem/progenitor cells.
 
Overall design RNA-seq of sorted myeloid progenitors from Mx+ Wt1fl/+ mice of different ages compared to age-matched control counterparts
 
Contributor(s) Pronier E, Koche RP, Levine RL
Citation(s) 30064973
Submission date Jan 31, 2018
Last update date Jan 08, 2020
Contact name Richard Koche
E-mail(s) kocher@mskcc.org
Organization name Memorial Sloan Kettering Cancer Center
Street address 417 E. 68th St.
City New York
State/province New York
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (12)
GSM2973896 MP-RNA1
GSM2973897 MP-RNA2
GSM2973898 MP-RNA3
Relations
BioProject PRJNA432423
SRA SRP131916

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109922_Table_HTseq_Pronier_12samples_rawcounts.txt.gz 345.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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