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Series GSE109906 Query DataSets for GSE109906
Status Public on Feb 15, 2018
Title RNAseq of cortex of 6-month old APPPS1 and APPPS1;Apoe-/- mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary One of the hallmarks of Alzheimer’s disease is the presence of extracellular diffuse and fibrillar plaques predominantly consisting of the amyloid-β (Aβ) peptide. ApoE influences the deposition of amyloid pathology through affecting the clearance and aggregation of monomeric Aβ in the brain. In addition to influencing Aβ metabolism, increasing evidence suggests that apoE influences microglial function in neurodegenerative diseases. Here, we characterize the impact that apoE has on amyloid pathology and the innate immune response in APPPS1∆E9 and APPPS1-21 transgenic mice. We report that Apoe deficiency reduced fibrillar plaque deposition consistent with previous studies. However, fibrillar plaques in Apoe-deficient mice exhibited a striking reduction in plaque compaction. Hyperspectral fluorescent imaging using luminescent conjugated oligothiophenes identified distinct Aβ morphotypes in Apoe-deficient mice. We also observed a significant reduction in fibrillar plaque-associated microgliosis and activated microglial gene expression in Apoe-deficient mice, along with significant increases in dystrophic neurites around fibrillar plaques. Our results suggest that apoE is critical in stimulating the innate immune response to amyloid pathology.
 
Overall design Assessed the cortical gene expression of 6-month old APPPS1-21;ApoE-/- (n=7) and APPPS1-21 mice (n=6).
 
Contributor(s) Jason U, David H
Citation(s) 29483128
Submission date Jan 31, 2018
Last update date Mar 21, 2019
Contact name Jason Ulrich
E-mail(s) ulrichjd@wustl.edu
Phone 3142731657
Organization name Washington University
Street address 425 S. Euclid
City St. Louis
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (13)
GSM2973640 LP70
GSM2973641 LP67
GSM2973642 LP30
Relations
BioProject PRJNA432321
SRA SRP131850

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Supplementary file Size Download File type/resource
GSE109906_RNA-seq_results.gene.rpkm.txt.gz 959.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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