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Series GSE109745 Query DataSets for GSE109745
Status Public on Jul 01, 2019
Title Maternal Vitamin C regulates DNA demethylation and development of the mouse embryonic germline [RNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Maternal Vitamin C is required in vivo for proper DNA demethylation and development of fetal germ cells in a mouse model of Vitamin C deficiency. Withdrawal of Vitamin C from the maternal diet does not affect overall embryonic development but leads to defects in the fetal germline, which persist well after Vitamin C re-supply during late gestation. The transcriptome of germ cells from Vitamin C-deficient embryos is remarkably similar to that of embryos carrying a mutation in Tet1, which is responsible for DNA demethylation and activation of regulators of meiosis. In agreement with these results, Vitamin C deficiency leads to an aberrant DNA methylation profile that includes incomplete demethylation of key regulators of meiosis and transposable elements. These findings reveal that deficiency in Vitamin C during gestation recapitulates a mutation in Tet1 and disrupts germline reprogramming and development. Our work further indicate that the embryonic germline is sensitive to perturbations of the maternal diet, providing a potential intergenerational mechanism for adjusting fecundity to environmental quality.
 
Overall design Examination of the transcriptional profile of single E13.5 female Gulo -/- embryos developed with and without Vitamin C supplementation. 6 biological replicates per condition.
 
Contributor(s) Parker SL, Ramalho-Santos M
Citation(s) 31485074
Submission date Jan 28, 2018
Last update date Sep 19, 2019
Contact name Stephanie L Parker
E-mail(s) slparker87@gmail.com
Organization name UCSF
Street address 35 Medical Center Way
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (12)
GSM2966265 1C F1
GSM2966266 1C F2
GSM2966267 2C F2
This SubSeries is part of SuperSeries:
GSE109747 Maternal Vitamin C regulates DNA demethylation and development of the mouse embryonic germline
Relations
BioProject PRJNA431945
SRA SRP131696

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109745_VitaminC_RNAseq_norm-log2exprs.txt.gz 1.2 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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